Cluster: HRGMv2_4028_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4028
- CGC Family ID: CGCFAM_04838
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4028_14 | HRGMv2_4028_14_16 | 19537 | 20694 | + | GT4 |
| CAZyme | HRGMv2_4028_14 | HRGMv2_4028_14_17 | 21326 | 21850 | + | GT2 |
| CAZyme | HRGMv2_4028_14 | HRGMv2_4028_14_18 | 21999 | 23732 | + | GT4 |
| TF | HRGMv2_4028_14 | HRGMv2_4028_14_19 | 23975 | 24940 | - | HTH_1 |
| TF | HRGMv2_4028_14 | HRGMv2_4028_14_20 | 24928 | 25869 | - | HTH_1 |
| TC | HRGMv2_4028_14 | HRGMv2_4028_14_21 | 26031 | 27296 | + | 2.A.61.1.3 |
Gene ID: HRGMv2_4028_14_16
Type: CAZyme
Location: 19537 - 20694 (+)
Type: CAZyme
Location: 19537 - 20694 (+)
Gene ID: HRGMv2_4028_14_17
Type: CAZyme
Location: 21326 - 21850 (+)
Type: CAZyme
Location: 21326 - 21850 (+)
Gene ID: HRGMv2_4028_14_18
Type: CAZyme
Location: 21999 - 23732 (+)
Type: CAZyme
Location: 21999 - 23732 (+)
Gene ID: HRGMv2_4028_14_19
Type: TF
Location: 23975 - 24940 (-)
Type: TF
Location: 23975 - 24940 (-)
Gene ID: HRGMv2_4028_14_20
Type: TF
Location: 24928 - 25869 (-)
Type: TF
Location: 24928 - 25869 (-)
Gene ID: HRGMv2_4028_14_21
Type: TC
Location: 26031 - 27296 (+)
Type: TC
Location: 26031 - 27296 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Duodenibacillus
Species
Duodenibacillus sp019418605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.