Cluster: HRGMv2_4013_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4013
- CGC Family ID: CGCFAM_00469
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4013_86 | HRGMv2_4013_86_1 | 28 | 1683 | - | 2.A.81.1.2 |
| TC | HRGMv2_4013_86 | HRGMv2_4013_86_2 | 1781 | 2191 | - | 9.B.27.3.1 |
| NULL(UNKNOWN) | HRGMv2_4013_86 | HRGMv2_4013_86_3 | 2261 | 2899 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4013_86 | HRGMv2_4013_86_4 | 3001 | 4650 | + | FTHFS |
| TC | HRGMv2_4013_86 | HRGMv2_4013_86_5 | 4670 | 5974 | - | 2.A.1.24.3 |
| pfam | HRGMv2_4013_86 | HRGMv2_4013_86_6 | 5976 | 6911 | - | Hist_deacetyl |
| CAZyme | HRGMv2_4013_86 | HRGMv2_4013_86_7 | 7088 | 8113 | + | GH103 |
Gene ID: HRGMv2_4013_86_1
Type: TC
Location: 28 - 1683 (-)
Type: TC
Location: 28 - 1683 (-)
Gene ID: HRGMv2_4013_86_2
Type: TC
Location: 1781 - 2191 (-)
Type: TC
Location: 1781 - 2191 (-)
Gene ID: HRGMv2_4013_86_3
Type:
Location: 2261 - 2899 (+)
Type:
Location: 2261 - 2899 (+)
Gene ID: HRGMv2_4013_86_4
Type: pfam
Location: 3001 - 4650 (+)
Type: pfam
Location: 3001 - 4650 (+)
Gene ID: HRGMv2_4013_86_5
Type: TC
Location: 4670 - 5974 (-)
Type: TC
Location: 4670 - 5974 (-)
Gene ID: HRGMv2_4013_86_6
Type: pfam
Location: 5976 - 6911 (-)
Type: pfam
Location: 5976 - 6911 (-)
Gene ID: HRGMv2_4013_86_7
Type: CAZyme
Location: 7088 - 8113 (+)
Type: CAZyme
Location: 7088 - 8113 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Parasutterella
Species
Parasutterella muris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.