Cluster: HRGMv2_4013_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4013
- CGC Family ID: CGCFAM_00346
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4013_45 | HRGMv2_4013_45_3 | 1750 | 2907 | - | 2.A.86.2.1 |
| TF | HRGMv2_4013_45 | HRGMv2_4013_45_4 | 3021 | 3380 | - | DUF24 |
| TC | HRGMv2_4013_45 | HRGMv2_4013_45_5 | 3471 | 6269 | + | 3.A.3.5.15 |
| CAZyme | HRGMv2_4013_45 | HRGMv2_4013_45_6 | 6422 | 7216 | + | GT2 |
| pfam | HRGMv2_4013_45 | HRGMv2_4013_45_7 | 7308 | 8069 | + | Endonuclease_1 |
| CAZyme | HRGMv2_4013_45 | HRGMv2_4013_45_8 | 8080 | 8889 | - | GT2 |
Gene ID: HRGMv2_4013_45_3
Type: TC
Location: 1750 - 2907 (-)
Type: TC
Location: 1750 - 2907 (-)
Gene ID: HRGMv2_4013_45_4
Type: TF
Location: 3021 - 3380 (-)
Type: TF
Location: 3021 - 3380 (-)
Gene ID: HRGMv2_4013_45_5
Type: TC
Location: 3471 - 6269 (+)
Type: TC
Location: 3471 - 6269 (+)
Gene ID: HRGMv2_4013_45_6
Type: CAZyme
Location: 6422 - 7216 (+)
Type: CAZyme
Location: 6422 - 7216 (+)
Gene ID: HRGMv2_4013_45_7
Type: pfam
Location: 7308 - 8069 (+)
Type: pfam
Location: 7308 - 8069 (+)
Gene ID: HRGMv2_4013_45_8
Type: CAZyme
Location: 8080 - 8889 (-)
Type: CAZyme
Location: 8080 - 8889 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Parasutterella
Species
Parasutterella muris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.