Cluster: HRGMv2_4013_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4013
- CGC Family ID: CGCFAM_09732
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4013_33 | HRGMv2_4013_33_8 | 7045 | 8553 | + | 2.A.80.1.1 |
| TC | HRGMv2_4013_33 | HRGMv2_4013_33_9 | 8739 | 9683 | + | 2.A.80.1.1 |
| pfam | HRGMv2_4013_33 | HRGMv2_4013_33_10 | 9753 | 10172 | - | DUF4186 |
| pfam | HRGMv2_4013_33 | HRGMv2_4013_33_11 | 10169 | 11365 | - | Asparaginase | Asparaginase_C |
| CAZyme | HRGMv2_4013_33 | HRGMv2_4013_33_12 | 11380 | 12795 | - | AA7 |
| TC | HRGMv2_4013_33 | HRGMv2_4013_33_13 | 13014 | 13895 | + | 2.A.7.28.11 |
Gene ID: HRGMv2_4013_33_8
Type: TC
Location: 7045 - 8553 (+)
Type: TC
Location: 7045 - 8553 (+)
Gene ID: HRGMv2_4013_33_9
Type: TC
Location: 8739 - 9683 (+)
Type: TC
Location: 8739 - 9683 (+)
Gene ID: HRGMv2_4013_33_10
Type: pfam
Location: 9753 - 10172 (-)
Type: pfam
Location: 9753 - 10172 (-)
Gene ID: HRGMv2_4013_33_11
Type: pfam
Location: 10169 - 11365 (-)
Type: pfam
Location: 10169 - 11365 (-)
Gene ID: HRGMv2_4013_33_12
Type: CAZyme
Location: 11380 - 12795 (-)
Type: CAZyme
Location: 11380 - 12795 (-)
Gene ID: HRGMv2_4013_33_13
Type: TC
Location: 13014 - 13895 (+)
Type: TC
Location: 13014 - 13895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Parasutterella
Species
Parasutterella muris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.