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Cluster: HRGMv2_4013_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4013_19 HRGMv2_4013_19_1 3 2363 + GT51
pfam HRGMv2_4013_19 HRGMv2_4013_19_2 2426 3067 - Nitrate_red_del
NULL(UNKNOWN) HRGMv2_4013_19 HRGMv2_4013_19_3 3086 3868 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4013_19 HRGMv2_4013_19_4 3881 4477 - 5.A.3.3.3
TC HRGMv2_4013_19 HRGMv2_4013_19_5 4480 7182 - 5.A.3.3.1
NULL(UNKNOWN) HRGMv2_4013_19 HRGMv2_4013_19_6 7221 7532 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4013_19 HRGMv2_4013_19_7 7519 8292 - 1.B.1.4.1
TF HRGMv2_4013_19 HRGMv2_4013_19_8 8891 9868 + HTH_1
TC HRGMv2_4013_19 HRGMv2_4013_19_9 9914 10675 - 3.A.1.3.2
TC HRGMv2_4013_19 HRGMv2_4013_19_10 10840 12102 - 1.A.11.1.4
Gene ID: HRGMv2_4013_19_1
Type: CAZyme
Location: 3 - 2363 (+)
Gene ID: HRGMv2_4013_19_2
Type: pfam
Location: 2426 - 3067 (-)
Gene ID: HRGMv2_4013_19_3
Type:
Location: 3086 - 3868 (-)
Gene ID: HRGMv2_4013_19_4
Type: TC
Location: 3881 - 4477 (-)
Gene ID: HRGMv2_4013_19_5
Type: TC
Location: 4480 - 7182 (-)
Gene ID: HRGMv2_4013_19_6
Type:
Location: 7221 - 7532 (-)
Gene ID: HRGMv2_4013_19_7
Type: TC
Location: 7519 - 8292 (-)
Gene ID: HRGMv2_4013_19_8
Type: TF
Location: 8891 - 9868 (+)
Gene ID: HRGMv2_4013_19_9
Type: TC
Location: 9914 - 10675 (-)
Gene ID: HRGMv2_4013_19_10
Type: TC
Location: 10840 - 12102 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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