Cluster: HRGMv2_4012_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4012
- CGC Family ID: CGCFAM_08226
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4012_23 | HRGMv2_4012_23_1 | 68 | 832 | + | GT9 |
| CAZyme | HRGMv2_4012_23 | HRGMv2_4012_23_2 | 862 | 2019 | + | GT4 |
| pfam | HRGMv2_4012_23 | HRGMv2_4012_23_3 | 1983 | 3242 | + | Wzy_C |
| CAZyme | HRGMv2_4012_23 | HRGMv2_4012_23_4 | 3350 | 4459 | + | GT4 |
| pfam | HRGMv2_4012_23 | HRGMv2_4012_23_5 | 4464 | 5261 | + | Kdo |
| STP | HRGMv2_4012_23 | HRGMv2_4012_23_6 | 5261 | 5854 | + | Pkinase |
| CAZyme | HRGMv2_4012_23 | HRGMv2_4012_23_7 | 5896 | 6927 | + | GT2 |
| pfam | HRGMv2_4012_23 | HRGMv2_4012_23_8 | 6947 | 7531 | - | YrbL-PhoP_reg |
| pfam | HRGMv2_4012_23 | HRGMv2_4012_23_9 | 7551 | 11021 | - | tRNA_anti-codon | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| CAZyme | HRGMv2_4012_23 | HRGMv2_4012_23_10 | 11029 | 11961 | - | GT101 |
| TC | HRGMv2_4012_23 | HRGMv2_4012_23_11 | 12025 | 14031 | - | 9.B.97.5.1 |
| peptidase | HRGMv2_4012_23 | HRGMv2_4012_23_12 | 14200 | 16239 | + | M03.UPA |
| pfam | HRGMv2_4012_23 | HRGMv2_4012_23_13 | 16253 | 17038 | + | Exo_endo_phos |
| TC | HRGMv2_4012_23 | HRGMv2_4012_23_14 | 17097 | 19001 | + | 9.B.97.5.1 |
Gene ID: HRGMv2_4012_23_1
Type: CAZyme
Location: 68 - 832 (+)
Type: CAZyme
Location: 68 - 832 (+)
Gene ID: HRGMv2_4012_23_2
Type: CAZyme
Location: 862 - 2019 (+)
Type: CAZyme
Location: 862 - 2019 (+)
Gene ID: HRGMv2_4012_23_3
Type: pfam
Location: 1983 - 3242 (+)
Type: pfam
Location: 1983 - 3242 (+)
Gene ID: HRGMv2_4012_23_4
Type: CAZyme
Location: 3350 - 4459 (+)
Type: CAZyme
Location: 3350 - 4459 (+)
Gene ID: HRGMv2_4012_23_5
Type: pfam
Location: 4464 - 5261 (+)
Type: pfam
Location: 4464 - 5261 (+)
Gene ID: HRGMv2_4012_23_6
Type: STP
Location: 5261 - 5854 (+)
Type: STP
Location: 5261 - 5854 (+)
Gene ID: HRGMv2_4012_23_7
Type: CAZyme
Location: 5896 - 6927 (+)
Type: CAZyme
Location: 5896 - 6927 (+)
Gene ID: HRGMv2_4012_23_8
Type: pfam
Location: 6947 - 7531 (-)
Type: pfam
Location: 6947 - 7531 (-)
Gene ID: HRGMv2_4012_23_9
Type: pfam
Location: 7551 - 11021 (-)
Type: pfam
Location: 7551 - 11021 (-)
Gene ID: HRGMv2_4012_23_10
Type: CAZyme
Location: 11029 - 11961 (-)
Type: CAZyme
Location: 11029 - 11961 (-)
Gene ID: HRGMv2_4012_23_11
Type: TC
Location: 12025 - 14031 (-)
Type: TC
Location: 12025 - 14031 (-)
Gene ID: HRGMv2_4012_23_12
Type: peptidase
Location: 14200 - 16239 (+)
Type: peptidase
Location: 14200 - 16239 (+)
Gene ID: HRGMv2_4012_23_13
Type: pfam
Location: 16253 - 17038 (+)
Type: pfam
Location: 16253 - 17038 (+)
Gene ID: HRGMv2_4012_23_14
Type: TC
Location: 17097 - 19001 (+)
Type: TC
Location: 17097 - 19001 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Aphodousia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.