Cluster: HRGMv2_4012_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4012
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4012_16 | HRGMv2_4012_16_9 | 4986 | 5744 | + | GT2 |
| pfam | HRGMv2_4012_16 | HRGMv2_4012_16_10 | 5737 | 6687 | + | Lip_A_acyltrans |
| pfam | HRGMv2_4012_16 | HRGMv2_4012_16_11 | 6684 | 7295 | + | LolA | LolA_3 |
| TC | HRGMv2_4012_16 | HRGMv2_4012_16_12 | 7292 | 9592 | + | 2.A.6.8.2 |
Gene ID: HRGMv2_4012_16_9
Type: CAZyme
Location: 4986 - 5744 (+)
Type: CAZyme
Location: 4986 - 5744 (+)
Gene ID: HRGMv2_4012_16_10
Type: pfam
Location: 5737 - 6687 (+)
Type: pfam
Location: 5737 - 6687 (+)
Gene ID: HRGMv2_4012_16_11
Type: pfam
Location: 6684 - 7295 (+)
Type: pfam
Location: 6684 - 7295 (+)
Gene ID: HRGMv2_4012_16_12
Type: TC
Location: 7292 - 9592 (+)
Type: TC
Location: 7292 - 9592 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Aphodousia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.