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Cluster: HRGMv2_4011_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4011_27 HRGMv2_4011_27_10 10175 11560 + AA7
NULL(UNKNOWN) HRGMv2_4011_27 HRGMv2_4011_27_11 11655 11930 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4011_27 HRGMv2_4011_27_12 12148 12567 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4011_27 HRGMv2_4011_27_13 12747 13475 - 3.A.1.3.4
pfam HRGMv2_4011_27 HRGMv2_4011_27_14 13538 14317 - RrnaAD
TC HRGMv2_4011_27 HRGMv2_4011_27_15 14861 15838 - 2.A.28.2.4
NULL(UNKNOWN) HRGMv2_4011_27 HRGMv2_4011_27_16 16007 16210 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4011_27 HRGMv2_4011_27_17 16331 17377 - TsaD
TC HRGMv2_4011_27 HRGMv2_4011_27_18 18506 19738 - 9.B.14.3.3
Gene ID: HRGMv2_4011_27_10
Type: CAZyme
Location: 10175 - 11560 (+)
Gene ID: HRGMv2_4011_27_11
Type:
Location: 11655 - 11930 (+)
Gene ID: HRGMv2_4011_27_12
Type:
Location: 12148 - 12567 (+)
Gene ID: HRGMv2_4011_27_13
Type: TC
Location: 12747 - 13475 (-)
Gene ID: HRGMv2_4011_27_14
Type: pfam
Location: 13538 - 14317 (-)
Gene ID: HRGMv2_4011_27_15
Type: TC
Location: 14861 - 15838 (-)
Gene ID: HRGMv2_4011_27_16
Type:
Location: 16007 - 16210 (+)
Gene ID: HRGMv2_4011_27_17
Type: pfam
Location: 16331 - 17377 (-)
Gene ID: HRGMv2_4011_27_18
Type: TC
Location: 18506 - 19738 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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