Cluster: HRGMv2_4011_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4011
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4011_14 | HRGMv2_4011_14_7 | 5333 | 6145 | - | 2.A.102.4.3 |
| pfam | HRGMv2_4011_14 | HRGMv2_4011_14_8 | 6357 | 7145 | - | CDP-OH_P_transf |
| STP | HRGMv2_4011_14 | HRGMv2_4011_14_9 | 7388 | 9190 | + | Pyr_redox_2 |
| TC | HRGMv2_4011_14 | HRGMv2_4011_14_10 | 9336 | 10505 | - | 3.A.15.2.1 |
| pfam | HRGMv2_4011_14 | HRGMv2_4011_14_11 | 10604 | 11047 | - | Usp |
| CAZyme | HRGMv2_4011_14 | HRGMv2_4011_14_12 | 11308 | 12078 | - | GT51 |
| TF | HRGMv2_4011_14 | HRGMv2_4011_14_13 | 12261 | 13205 | - | HTH_1 |
| TC | HRGMv2_4011_14 | HRGMv2_4011_14_14 | 13649 | 14341 | + | 1.B.6.1.12 |
Gene ID: HRGMv2_4011_14_7
Type: TC
Location: 5333 - 6145 (-)
Type: TC
Location: 5333 - 6145 (-)
Gene ID: HRGMv2_4011_14_8
Type: pfam
Location: 6357 - 7145 (-)
Type: pfam
Location: 6357 - 7145 (-)
Gene ID: HRGMv2_4011_14_9
Type: STP
Location: 7388 - 9190 (+)
Type: STP
Location: 7388 - 9190 (+)
Gene ID: HRGMv2_4011_14_10
Type: TC
Location: 9336 - 10505 (-)
Type: TC
Location: 9336 - 10505 (-)
Gene ID: HRGMv2_4011_14_11
Type: pfam
Location: 10604 - 11047 (-)
Type: pfam
Location: 10604 - 11047 (-)
Gene ID: HRGMv2_4011_14_12
Type: CAZyme
Location: 11308 - 12078 (-)
Type: CAZyme
Location: 11308 - 12078 (-)
Gene ID: HRGMv2_4011_14_13
Type: TF
Location: 12261 - 13205 (-)
Type: TF
Location: 12261 - 13205 (-)
Gene ID: HRGMv2_4011_14_14
Type: TC
Location: 13649 - 14341 (+)
Type: TC
Location: 13649 - 14341 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Neisseriaceae
Genus
Eikenella
Species
Eikenella corrodens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.