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Cluster: HRGMv2_4010_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4010_3 HRGMv2_4010_3_20 19448 21634 + 2.A.37.2.5
TC HRGMv2_4010_3 HRGMv2_4010_3_21 21714 24080 + 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_4010_3 HRGMv2_4010_3_22 24279 25025 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4010_3 HRGMv2_4010_3_23 25127 26515 - GH23
pfam HRGMv2_4010_3 HRGMv2_4010_3_24 26542 28530 - Porin_10
pfam HRGMv2_4010_3 HRGMv2_4010_3_25 28663 30372 + tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
TC HRGMv2_4010_3 HRGMv2_4010_3_26 30373 31260 + 2.A.115.1.5
TF HRGMv2_4010_3 HRGMv2_4010_3_27 31413 31982 + GerE
STP HRGMv2_4010_3 HRGMv2_4010_3_28 32068 33219 + FecR
TC HRGMv2_4010_3 HRGMv2_4010_3_29 33332 36784 + 1.B.14.6.1
Gene ID: HRGMv2_4010_3_20
Type: TC
Location: 19448 - 21634 (+)
Gene ID: HRGMv2_4010_3_21
Type: TC
Location: 21714 - 24080 (+)
Gene ID: HRGMv2_4010_3_22
Type:
Location: 24279 - 25025 (-)
Gene ID: HRGMv2_4010_3_23
Type: CAZyme
Location: 25127 - 26515 (-)
Gene ID: HRGMv2_4010_3_24
Type: pfam
Location: 26542 - 28530 (-)
Gene ID: HRGMv2_4010_3_25
Type: pfam
Location: 28663 - 30372 (+)
Gene ID: HRGMv2_4010_3_26
Type: TC
Location: 30373 - 31260 (+)
Gene ID: HRGMv2_4010_3_27
Type: TF
Location: 31413 - 31982 (+)
Gene ID: HRGMv2_4010_3_28
Type: STP
Location: 32068 - 33219 (+)
Gene ID: HRGMv2_4010_3_29
Type: TC
Location: 33332 - 36784 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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