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Cluster: HRGMv2_4010_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4010_2 HRGMv2_4010_2_8 12377 13864 + GT2
CAZyme HRGMv2_4010_2 HRGMv2_4010_2_9 13944 15407 + GT2
pfam HRGMv2_4010_2 HRGMv2_4010_2_10 15430 16143 - TP_methylase
TC HRGMv2_4010_2 HRGMv2_4010_2_11 16432 17574 + 3.A.1.13.2
TC HRGMv2_4010_2 HRGMv2_4010_2_12 17580 18623 + 3.A.1.13.2
TC HRGMv2_4010_2 HRGMv2_4010_2_13 18616 19632 + 3.A.1.13.2
pfam HRGMv2_4010_2 HRGMv2_4010_2_14 19612 21393 - CbiD | CbiJ
pfam HRGMv2_4010_2 HRGMv2_4010_2_15 21401 23224 - TP_methylase | CbiG_C | CbiG_N | CbiG_mid
TC HRGMv2_4010_2 HRGMv2_4010_2_16 23265 24536 - 2.A.55.2.6
Gene ID: HRGMv2_4010_2_8
Type: CAZyme
Location: 12377 - 13864 (+)
Gene ID: HRGMv2_4010_2_9
Type: CAZyme
Location: 13944 - 15407 (+)
Gene ID: HRGMv2_4010_2_10
Type: pfam
Location: 15430 - 16143 (-)
Gene ID: HRGMv2_4010_2_11
Type: TC
Location: 16432 - 17574 (+)
Gene ID: HRGMv2_4010_2_12
Type: TC
Location: 17580 - 18623 (+)
Gene ID: HRGMv2_4010_2_13
Type: TC
Location: 18616 - 19632 (+)
Gene ID: HRGMv2_4010_2_14
Type: pfam
Location: 19612 - 21393 (-)
Gene ID: HRGMv2_4010_2_15
Type: pfam
Location: 21401 - 23224 (-)
Gene ID: HRGMv2_4010_2_16
Type: TC
Location: 23265 - 24536 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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