Cluster: HRGMv2_4007_CGC11
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4007
- CGC Family ID: CGCFAM_09533
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4007_10 | HRGMv2_4007_10_32 | 42852 | 44414 | + | 3.B.1.1.2 |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_33 | 44417 | 45340 | + | LTD | OAD_gamma |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_34 | 45356 | 45805 | + | Biotin_lipoyl | GCV_H | Biotin_lipoyl_2 |
| TC | HRGMv2_4007_10 | HRGMv2_4007_10_35 | 45810 | 46952 | + | 3.B.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_4007_10 | HRGMv2_4007_10_36 | 47153 | 47761 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_37 | 47761 | 48363 | + | DUF2764 |
| TC | HRGMv2_4007_10 | HRGMv2_4007_10_38 | 48387 | 50141 | + | 3.A.2.3.3 |
| TC | HRGMv2_4007_10 | HRGMv2_4007_10_39 | 50131 | 51453 | + | 3.A.2.3.3 |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_40 | 51453 | 52070 | + | ATP-synt_D |
| TC | HRGMv2_4007_10 | HRGMv2_4007_10_41 | 52063 | 53901 | + | 3.A.2.3.3 |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_42 | 53926 | 54345 | + | ATP-synt_C | ATP-synt_C |
| pfam | HRGMv2_4007_10 | HRGMv2_4007_10_43 | 54440 | 55900 | + | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_4007_10 | HRGMv2_4007_10_44 | 55989 | 57053 | + | GH171 |
Gene ID: HRGMv2_4007_10_32
Type: TC
Location: 42852 - 44414 (+)
Type: TC
Location: 42852 - 44414 (+)
Gene ID: HRGMv2_4007_10_33
Type: pfam
Location: 44417 - 45340 (+)
Type: pfam
Location: 44417 - 45340 (+)
Gene ID: HRGMv2_4007_10_34
Type: pfam
Location: 45356 - 45805 (+)
Type: pfam
Location: 45356 - 45805 (+)
Gene ID: HRGMv2_4007_10_35
Type: TC
Location: 45810 - 46952 (+)
Type: TC
Location: 45810 - 46952 (+)
Gene ID: HRGMv2_4007_10_36
Type:
Location: 47153 - 47761 (+)
Type:
Location: 47153 - 47761 (+)
Gene ID: HRGMv2_4007_10_37
Type: pfam
Location: 47761 - 48363 (+)
Type: pfam
Location: 47761 - 48363 (+)
Gene ID: HRGMv2_4007_10_38
Type: TC
Location: 48387 - 50141 (+)
Type: TC
Location: 48387 - 50141 (+)
Gene ID: HRGMv2_4007_10_39
Type: TC
Location: 50131 - 51453 (+)
Type: TC
Location: 50131 - 51453 (+)
Gene ID: HRGMv2_4007_10_40
Type: pfam
Location: 51453 - 52070 (+)
Type: pfam
Location: 51453 - 52070 (+)
Gene ID: HRGMv2_4007_10_41
Type: TC
Location: 52063 - 53901 (+)
Type: TC
Location: 52063 - 53901 (+)
Gene ID: HRGMv2_4007_10_42
Type: pfam
Location: 53926 - 54345 (+)
Type: pfam
Location: 53926 - 54345 (+)
Gene ID: HRGMv2_4007_10_43
Type: pfam
Location: 54440 - 55900 (+)
Type: pfam
Location: 54440 - 55900 (+)
Gene ID: HRGMv2_4007_10_44
Type: CAZyme
Location: 55989 - 57053 (+)
Type: CAZyme
Location: 55989 - 57053 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Cryptobacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.