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Cluster: HRGMv2_4005_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4005_20 HRGMv2_4005_20_4 3200 4222 - 9.B.157.1.1
pfam HRGMv2_4005_20 HRGMv2_4005_20_5 4361 5023 - AICARFT_IMPCHas | MGS
CAZyme HRGMv2_4005_20 HRGMv2_4005_20_6 5226 6449 + GH76
CAZyme HRGMv2_4005_20 HRGMv2_4005_20_7 6495 7955 + GH125
TF HRGMv2_4005_20 HRGMv2_4005_20_8 8041 12012 + HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_4005_20 HRGMv2_4005_20_9 12494 15289 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4005_20 HRGMv2_4005_20_10 15813 16805 - GH43_26
Gene ID: HRGMv2_4005_20_4
Type: TC
Location: 3200 - 4222 (-)
Gene ID: HRGMv2_4005_20_5
Type: pfam
Location: 4361 - 5023 (-)
Gene ID: HRGMv2_4005_20_6
Type: CAZyme
Location: 5226 - 6449 (+)
Gene ID: HRGMv2_4005_20_7
Type: CAZyme
Location: 6495 - 7955 (+)
Gene ID: HRGMv2_4005_20_8
Type: TF
Location: 8041 - 12012 (+)
Gene ID: HRGMv2_4005_20_9
Type:
Location: 12494 - 15289 (+)
Gene ID: HRGMv2_4005_20_10
Type: CAZyme
Location: 15813 - 16805 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4005_20_7 vegan > omnivore 1.97808 0.01557

🧭 Explore Read Mapping of CGC

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