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Cluster: HRGMv2_4005_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4005_19 HRGMv2_4005_19_4 2757 3476 - 1.A.14.2.2
NULL(UNKNOWN) HRGMv2_4005_19 HRGMv2_4005_19_5 3789 4349 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4005_19 HRGMv2_4005_19_6 4510 5205 - RadC | UPF0758_N
CAZyme HRGMv2_4005_19 HRGMv2_4005_19_7 5202 6254 - GT2
pfam HRGMv2_4005_19 HRGMv2_4005_19_8 6410 6976 - EFP | EFP_N | Elong-fact-P_C
pfam HRGMv2_4005_19 HRGMv2_4005_19_9 7165 7320 + Ribosomal_L34
TC HRGMv2_4005_19 HRGMv2_4005_19_10 7676 8041 + 1.E.14.1.13
TC HRGMv2_4005_19 HRGMv2_4005_19_11 8038 8730 + 2.A.122.1.1
TC HRGMv2_4005_19 HRGMv2_4005_19_12 8965 10392 + 3.A.1.11.8
TC HRGMv2_4005_19 HRGMv2_4005_19_13 10389 11177 + 3.A.1.11.1
TC HRGMv2_4005_19 HRGMv2_4005_19_14 11174 11962 + 3.A.1.11.8
STP HRGMv2_4005_19 HRGMv2_4005_19_15 12098 13525 + SBP_bac_1
TC HRGMv2_4005_19 HRGMv2_4005_19_16 14174 15982 + 4.C.1.1.14
Gene ID: HRGMv2_4005_19_4
Type: TC
Location: 2757 - 3476 (-)
Gene ID: HRGMv2_4005_19_5
Type:
Location: 3789 - 4349 (-)
Gene ID: HRGMv2_4005_19_6
Type: pfam
Location: 4510 - 5205 (-)
Gene ID: HRGMv2_4005_19_7
Type: CAZyme
Location: 5202 - 6254 (-)
Gene ID: HRGMv2_4005_19_8
Type: pfam
Location: 6410 - 6976 (-)
Gene ID: HRGMv2_4005_19_9
Type: pfam
Location: 7165 - 7320 (+)
Gene ID: HRGMv2_4005_19_10
Type: TC
Location: 7676 - 8041 (+)
Gene ID: HRGMv2_4005_19_11
Type: TC
Location: 8038 - 8730 (+)
Gene ID: HRGMv2_4005_19_12
Type: TC
Location: 8965 - 10392 (+)
Gene ID: HRGMv2_4005_19_13
Type: TC
Location: 10389 - 11177 (+)
Gene ID: HRGMv2_4005_19_14
Type: TC
Location: 11174 - 11962 (+)
Gene ID: HRGMv2_4005_19_15
Type: STP
Location: 12098 - 13525 (+)
Gene ID: HRGMv2_4005_19_16
Type: TC
Location: 14174 - 15982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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