Cluster: HRGMv2_4002_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4002
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4002_92 | HRGMv2_4002_92_3 | 1151 | 2263 | - | GT4 |
| CAZyme | HRGMv2_4002_92 | HRGMv2_4002_92_4 | 2260 | 3243 | - | GT2 |
| pfam | HRGMv2_4002_92 | HRGMv2_4002_92_5 | 3240 | 4340 | - | Glyco_tran_WbsX |
| TC | HRGMv2_4002_92 | HRGMv2_4002_92_6 | 4648 | 5013 | + | 2.A.7.34.6 |
Gene ID: HRGMv2_4002_92_3
Type: CAZyme
Location: 1151 - 2263 (-)
Type: CAZyme
Location: 1151 - 2263 (-)
Gene ID: HRGMv2_4002_92_4
Type: CAZyme
Location: 2260 - 3243 (-)
Type: CAZyme
Location: 2260 - 3243 (-)
Gene ID: HRGMv2_4002_92_5
Type: pfam
Location: 3240 - 4340 (-)
Type: pfam
Location: 3240 - 4340 (-)
Gene ID: HRGMv2_4002_92_6
Type: TC
Location: 4648 - 5013 (+)
Type: TC
Location: 4648 - 5013 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4002_92_4 | vegetarian > vegan | 1.48027 | 0.01287 |