Cluster: HRGMv2_4002_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4002
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4002_127 | HRGMv2_4002_127_2 | 1694 | 2332 | - | 2.A.115.2.14 |
| TC | HRGMv2_4002_127 | HRGMv2_4002_127_3 | 2348 | 3733 | - | 2.A.66.1.32 |
| STP | HRGMv2_4002_127 | HRGMv2_4002_127_4 | 3896 | 4804 | + | PALP |
| CAZyme | HRGMv2_4002_127 | HRGMv2_4002_127_5 | 4819 | 5730 | + | GT2 |
Gene ID: HRGMv2_4002_127_2
Type: TC
Location: 1694 - 2332 (-)
Type: TC
Location: 1694 - 2332 (-)
Gene ID: HRGMv2_4002_127_3
Type: TC
Location: 2348 - 3733 (-)
Type: TC
Location: 2348 - 3733 (-)
Gene ID: HRGMv2_4002_127_4
Type: STP
Location: 3896 - 4804 (+)
Type: STP
Location: 3896 - 4804 (+)
Gene ID: HRGMv2_4002_127_5
Type: CAZyme
Location: 4819 - 5730 (+)
Type: CAZyme
Location: 4819 - 5730 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.