Cluster: HRGMv2_4002_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4002
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4002_110 | HRGMv2_4002_110_2 | 449 | 1336 | + | 3.A.1.147.2 |
| NULL(UNKNOWN) | HRGMv2_4002_110 | HRGMv2_4002_110_3 | 1342 | 2013 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4002_110 | HRGMv2_4002_110_4 | 2040 | 3074 | + | DUF4857 |
| CAZyme | HRGMv2_4002_110 | HRGMv2_4002_110_5 | 3139 | 4218 | - | CBM50 |
Gene ID: HRGMv2_4002_110_2
Type: TC
Location: 449 - 1336 (+)
Type: TC
Location: 449 - 1336 (+)
Gene ID: HRGMv2_4002_110_3
Type:
Location: 1342 - 2013 (+)
Type:
Location: 1342 - 2013 (+)
Gene ID: HRGMv2_4002_110_4
Type: pfam
Location: 2040 - 3074 (+)
Type: pfam
Location: 2040 - 3074 (+)
Gene ID: HRGMv2_4002_110_5
Type: CAZyme
Location: 3139 - 4218 (-)
Type: CAZyme
Location: 3139 - 4218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.