Cluster: HRGMv2_3998_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3998
- CGC Family ID: CGCFAM_06260
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_6 | 8503 | 8967 | + | 9.B.2.1.5 |
| sulfatase | HRGMv2_3998_27 | HRGMv2_3998_27_7 | 8997 | 10103 | - | S1_7 |
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_8 | 10154 | 10603 | - | 8.A.58.2.6 |
| pfam | HRGMv2_3998_27 | HRGMv2_3998_27_9 | 10619 | 11215 | - | RuvC |
| pfam | HRGMv2_3998_27 | HRGMv2_3998_27_10 | 11212 | 11523 | - | DUF4286 |
| CAZyme | HRGMv2_3998_27 | HRGMv2_3998_27_11 | 11520 | 12281 | - | GT2 |
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_12 | 12299 | 12727 | - | 1.B.42.1.2 |
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_13 | 12687 | 13190 | - | 1.B.42.1.2 |
| pfam | HRGMv2_3998_27 | HRGMv2_3998_27_14 | 13199 | 13828 | - | PRK |
| pfam | HRGMv2_3998_27 | HRGMv2_3998_27_15 | 13990 | 14832 | + | AP_endonuc_2 |
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_16 | 14878 | 16002 | + | 2.A.2.6.2 |
| NULL(UNKNOWN) | HRGMv2_3998_27 | HRGMv2_3998_27_17 | 16105 | 16266 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3998_27 | HRGMv2_3998_27_18 | 16308 | 18512 | - | 3.A.10.1.10 |
Gene ID: HRGMv2_3998_27_6
Type: TC
Location: 8503 - 8967 (+)
Type: TC
Location: 8503 - 8967 (+)
Gene ID: HRGMv2_3998_27_7
Type: sulfatase
Location: 8997 - 10103 (-)
Type: sulfatase
Location: 8997 - 10103 (-)
Gene ID: HRGMv2_3998_27_8
Type: TC
Location: 10154 - 10603 (-)
Type: TC
Location: 10154 - 10603 (-)
Gene ID: HRGMv2_3998_27_9
Type: pfam
Location: 10619 - 11215 (-)
Type: pfam
Location: 10619 - 11215 (-)
Gene ID: HRGMv2_3998_27_10
Type: pfam
Location: 11212 - 11523 (-)
Type: pfam
Location: 11212 - 11523 (-)
Gene ID: HRGMv2_3998_27_11
Type: CAZyme
Location: 11520 - 12281 (-)
Type: CAZyme
Location: 11520 - 12281 (-)
Gene ID: HRGMv2_3998_27_12
Type: TC
Location: 12299 - 12727 (-)
Type: TC
Location: 12299 - 12727 (-)
Gene ID: HRGMv2_3998_27_13
Type: TC
Location: 12687 - 13190 (-)
Type: TC
Location: 12687 - 13190 (-)
Gene ID: HRGMv2_3998_27_14
Type: pfam
Location: 13199 - 13828 (-)
Type: pfam
Location: 13199 - 13828 (-)
Gene ID: HRGMv2_3998_27_15
Type: pfam
Location: 13990 - 14832 (+)
Type: pfam
Location: 13990 - 14832 (+)
Gene ID: HRGMv2_3998_27_16
Type: TC
Location: 14878 - 16002 (+)
Type: TC
Location: 14878 - 16002 (+)
Gene ID: HRGMv2_3998_27_17
Type:
Location: 16105 - 16266 (-)
Type:
Location: 16105 - 16266 (-)
Gene ID: HRGMv2_3998_27_18
Type: TC
Location: 16308 - 18512 (-)
Type: TC
Location: 16308 - 18512 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Paramuribaculum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.