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Cluster: HRGMv2_3996_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3996_36 HRGMv2_3996_36_2 1294 2475 - 2.A.1.7.17
TF HRGMv2_3996_36 HRGMv2_3996_36_3 2716 5031 - HTH_AraC
NULL(UNKNOWN) HRGMv2_3996_36 HRGMv2_3996_36_4 5310 5435 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3996_36 HRGMv2_3996_36_5 5408 8200 - 1.B.42.1.8
STP HRGMv2_3996_36 HRGMv2_3996_36_6 8268 8822 - HD
STP HRGMv2_3996_36 HRGMv2_3996_36_7 8916 10685 - AAA
TC HRGMv2_3996_36 HRGMv2_3996_36_8 10762 13035 - 2.A.37.1.8
peptidase HRGMv2_3996_36 HRGMv2_3996_36_9 13187 14410 - M20.003
CAZyme HRGMv2_3996_36 HRGMv2_3996_36_10 14527 16329 - GH143
pfam HRGMv2_3996_36 HRGMv2_3996_36_11 16382 19048 - DUF3943
pfam HRGMv2_3996_36 HRGMv2_3996_36_12 19184 20236 - DHQ_synthase | DHQS_C
TC HRGMv2_3996_36 HRGMv2_3996_36_13 20591 23554 + 1.C.105.2.12
Gene ID: HRGMv2_3996_36_2
Type: TC
Location: 1294 - 2475 (-)
Gene ID: HRGMv2_3996_36_3
Type: TF
Location: 2716 - 5031 (-)
Gene ID: HRGMv2_3996_36_4
Type:
Location: 5310 - 5435 (+)
Gene ID: HRGMv2_3996_36_5
Type: TC
Location: 5408 - 8200 (-)
Gene ID: HRGMv2_3996_36_6
Type: STP
Location: 8268 - 8822 (-)
Gene ID: HRGMv2_3996_36_7
Type: STP
Location: 8916 - 10685 (-)
Gene ID: HRGMv2_3996_36_8
Type: TC
Location: 10762 - 13035 (-)
Gene ID: HRGMv2_3996_36_9
Type: peptidase
Location: 13187 - 14410 (-)
Gene ID: HRGMv2_3996_36_10
Type: CAZyme
Location: 14527 - 16329 (-)
Gene ID: HRGMv2_3996_36_11
Type: pfam
Location: 16382 - 19048 (-)
Gene ID: HRGMv2_3996_36_12
Type: pfam
Location: 19184 - 20236 (-)
Gene ID: HRGMv2_3996_36_13
Type: TC
Location: 20591 - 23554 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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