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Cluster: HRGMv2_3996_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3996_110 HRGMv2_3996_110_2 658 2841 + GH36
CAZyme HRGMv2_3996_110 HRGMv2_3996_110_3 2870 4252 + GH29
CAZyme HRGMv2_3996_110 HRGMv2_3996_110_4 4249 6579 + GH3
pfam HRGMv2_3996_110 HRGMv2_3996_110_5 6854 7783 + Thioredoxin | AhpC-TSA | TonB_C | Redoxin | Thioredoxin_2 | Thioredoxin_8
TC HRGMv2_3996_110 HRGMv2_3996_110_6 7852 8577 + 3.A.1.122.14
TC HRGMv2_3996_110 HRGMv2_3996_110_7 8574 9833 + 3.A.1.122.1
TC HRGMv2_3996_110 HRGMv2_3996_110_8 9844 11088 + 3.A.1.122.2
Gene ID: HRGMv2_3996_110_2
Type: CAZyme
Location: 658 - 2841 (+)
Gene ID: HRGMv2_3996_110_3
Type: CAZyme
Location: 2870 - 4252 (+)
Gene ID: HRGMv2_3996_110_4
Type: CAZyme
Location: 4249 - 6579 (+)
Gene ID: HRGMv2_3996_110_5
Type: pfam
Location: 6854 - 7783 (+)
Gene ID: HRGMv2_3996_110_6
Type: TC
Location: 7852 - 8577 (+)
Gene ID: HRGMv2_3996_110_7
Type: TC
Location: 8574 - 9833 (+)
Gene ID: HRGMv2_3996_110_8
Type: TC
Location: 9844 - 11088 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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