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Cluster: HRGMv2_3996_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3996_109 HRGMv2_3996_109_5 4325 4567 - 3.D.1.6.4
NULL(UNKNOWN) HRGMv2_3996_109 HRGMv2_3996_109_6 4655 4816 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3996_109 HRGMv2_3996_109_7 4823 5428 + DUF4254
CAZyme HRGMv2_3996_109 HRGMv2_3996_109_8 5455 6510 + GT9
TC HRGMv2_3996_109 HRGMv2_3996_109_9 6553 7182 - 2.A.123.4.1
CAZyme HRGMv2_3996_109 HRGMv2_3996_109_10 7214 7987 - GT2
CAZyme HRGMv2_3996_109 HRGMv2_3996_109_11 8014 9522 - GT83
STP HRGMv2_3996_109 HRGMv2_3996_109_12 9519 10355 - PfkB
STP HRGMv2_3996_109 HRGMv2_3996_109_13 10483 11358 - PfkB
TC HRGMv2_3996_109 HRGMv2_3996_109_14 11417 13075 - 2.A.81.1.2
Gene ID: HRGMv2_3996_109_5
Type: TC
Location: 4325 - 4567 (-)
Gene ID: HRGMv2_3996_109_6
Type:
Location: 4655 - 4816 (-)
Gene ID: HRGMv2_3996_109_7
Type: pfam
Location: 4823 - 5428 (+)
Gene ID: HRGMv2_3996_109_8
Type: CAZyme
Location: 5455 - 6510 (+)
Gene ID: HRGMv2_3996_109_9
Type: TC
Location: 6553 - 7182 (-)
Gene ID: HRGMv2_3996_109_10
Type: CAZyme
Location: 7214 - 7987 (-)
Gene ID: HRGMv2_3996_109_11
Type: CAZyme
Location: 8014 - 9522 (-)
Gene ID: HRGMv2_3996_109_12
Type: STP
Location: 9519 - 10355 (-)
Gene ID: HRGMv2_3996_109_13
Type: STP
Location: 10483 - 11358 (-)
Gene ID: HRGMv2_3996_109_14
Type: TC
Location: 11417 - 13075 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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