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Cluster: HRGMv2_3995_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3995_201 HRGMv2_3995_201_18 16947 19955 - 1.B.14.6.1
TF HRGMv2_3995_201 HRGMv2_3995_201_19 20216 22078 - HTH_AraC
TC HRGMv2_3995_201 HRGMv2_3995_201_20 22075 23049 - 3.A.1.2.1
CAZyme HRGMv2_3995_201 HRGMv2_3995_201_21 23276 25114 + GH32
TC HRGMv2_3995_201 HRGMv2_3995_201_22 25146 26336 + 2.A.1.7.17
STP HRGMv2_3995_201 HRGMv2_3995_201_23 26371 27249 + PfkB
pfam HRGMv2_3995_201 HRGMv2_3995_201_24 27412 27819 + DUF4332 | HHH_5
TC HRGMv2_3995_201 HRGMv2_3995_201_25 27964 28776 + 1.B.18.3.3
TC HRGMv2_3995_201 HRGMv2_3995_201_26 28830 31199 + 8.A.3.3.4
Gene ID: HRGMv2_3995_201_18
Type: TC
Location: 16947 - 19955 (-)
Gene ID: HRGMv2_3995_201_19
Type: TF
Location: 20216 - 22078 (-)
Gene ID: HRGMv2_3995_201_20
Type: TC
Location: 22075 - 23049 (-)
Gene ID: HRGMv2_3995_201_21
Type: CAZyme
Location: 23276 - 25114 (+)
Gene ID: HRGMv2_3995_201_22
Type: TC
Location: 25146 - 26336 (+)
Gene ID: HRGMv2_3995_201_23
Type: STP
Location: 26371 - 27249 (+)
Gene ID: HRGMv2_3995_201_24
Type: pfam
Location: 27412 - 27819 (+)
Gene ID: HRGMv2_3995_201_25
Type: TC
Location: 27964 - 28776 (+)
Gene ID: HRGMv2_3995_201_26
Type: TC
Location: 28830 - 31199 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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