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Cluster: HRGMv2_3995_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3995_172 HRGMv2_3995_172_19 21707 22972 + 9.B.146.1.3
pfam HRGMv2_3995_172 HRGMv2_3995_172_20 22981 24393 + Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N
pfam HRGMv2_3995_172 HRGMv2_3995_172_21 24533 24865 + FTSW_RODA_SPOVE
TC HRGMv2_3995_172 HRGMv2_3995_172_22 24862 25749 + 2.A.103.1.3
pfam HRGMv2_3995_172 HRGMv2_3995_172_23 25784 26287 + Glyco_transf_28
CAZyme HRGMv2_3995_172 HRGMv2_3995_172_24 26272 26889 + GT28
Gene ID: HRGMv2_3995_172_19
Type: TC
Location: 21707 - 22972 (+)
Gene ID: HRGMv2_3995_172_20
Type: pfam
Location: 22981 - 24393 (+)
Gene ID: HRGMv2_3995_172_21
Type: pfam
Location: 24533 - 24865 (+)
Gene ID: HRGMv2_3995_172_22
Type: TC
Location: 24862 - 25749 (+)
Gene ID: HRGMv2_3995_172_23
Type: pfam
Location: 25784 - 26287 (+)
Gene ID: HRGMv2_3995_172_24
Type: CAZyme
Location: 26272 - 26889 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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