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Cluster: HRGMv2_3995_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3995_143 HRGMv2_3995_143_10 12041 13378 - 2.A.2.3.5
CAZyme HRGMv2_3995_143 HRGMv2_3995_143_11 13611 14774 - GH130_1
CAZyme HRGMv2_3995_143 HRGMv2_3995_143_12 14840 15976 - GH26
CAZyme HRGMv2_3995_143 HRGMv2_3995_143_13 16086 17480 - GH26
pfam HRGMv2_3995_143 HRGMv2_3995_143_14 17515 18843 - SGBP_B_XBD
pfam HRGMv2_3995_143 HRGMv2_3995_143_15 18874 20565 - SusD_RagB | SusD-like_3
TC HRGMv2_3995_143 HRGMv2_3995_143_16 20591 22291 - 1.B.14.6.1
TC HRGMv2_3995_143 HRGMv2_3995_143_17 22288 23796 - 1.B.14.6.1
CAZyme HRGMv2_3995_143 HRGMv2_3995_143_18 24287 25219 + GH36
Gene ID: HRGMv2_3995_143_10
Type: TC
Location: 12041 - 13378 (-)
Gene ID: HRGMv2_3995_143_11
Type: CAZyme
Location: 13611 - 14774 (-)
Gene ID: HRGMv2_3995_143_12
Type: CAZyme
Location: 14840 - 15976 (-)
Gene ID: HRGMv2_3995_143_13
Type: CAZyme
Location: 16086 - 17480 (-)
Gene ID: HRGMv2_3995_143_14
Type: pfam
Location: 17515 - 18843 (-)
Gene ID: HRGMv2_3995_143_15
Type: pfam
Location: 18874 - 20565 (-)
Gene ID: HRGMv2_3995_143_16
Type: TC
Location: 20591 - 22291 (-)
Gene ID: HRGMv2_3995_143_17
Type: TC
Location: 22288 - 23796 (-)
Gene ID: HRGMv2_3995_143_18
Type: CAZyme
Location: 24287 - 25219 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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