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Cluster: HRGMv2_3992_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3992_33 HRGMv2_3992_33_4 2643 4535 - GH13_46
CAZyme HRGMv2_3992_33 HRGMv2_3992_33_5 4595 6511 - GH13_14
CAZyme HRGMv2_3992_33 HRGMv2_3992_33_6 6590 8716 - GH97
CAZyme HRGMv2_3992_33 HRGMv2_3992_33_7 8894 11593 - CBM20 | GH77
TC HRGMv2_3992_33 HRGMv2_3992_33_8 11848 12417 - 9.B.196.1.2
pfam HRGMv2_3992_33 HRGMv2_3992_33_9 12841 14295 - SusF_N
pfam HRGMv2_3992_33 HRGMv2_3992_33_10 14421 15554 - SusE | SusF_SusE
TC HRGMv2_3992_33 HRGMv2_3992_33_11 15685 17370 - 8.A.46.1.1
TC HRGMv2_3992_33 HRGMv2_3992_33_12 17419 20211 - 1.B.14.6.1
TF HRGMv2_3992_33 HRGMv2_3992_33_13 20683 21612 + LacI
TC HRGMv2_3992_33 HRGMv2_3992_33_14 21916 23241 + 2.A.2.6.2
Gene ID: HRGMv2_3992_33_4
Type: CAZyme
Location: 2643 - 4535 (-)
Gene ID: HRGMv2_3992_33_5
Type: CAZyme
Location: 4595 - 6511 (-)
Gene ID: HRGMv2_3992_33_6
Type: CAZyme
Location: 6590 - 8716 (-)
Gene ID: HRGMv2_3992_33_7
Type: CAZyme
Location: 8894 - 11593 (-)
Gene ID: HRGMv2_3992_33_8
Type: TC
Location: 11848 - 12417 (-)
Gene ID: HRGMv2_3992_33_9
Type: pfam
Location: 12841 - 14295 (-)
Gene ID: HRGMv2_3992_33_10
Type: pfam
Location: 14421 - 15554 (-)
Gene ID: HRGMv2_3992_33_11
Type: TC
Location: 15685 - 17370 (-)
Gene ID: HRGMv2_3992_33_12
Type: TC
Location: 17419 - 20211 (-)
Gene ID: HRGMv2_3992_33_13
Type: TF
Location: 20683 - 21612 (+)
Gene ID: HRGMv2_3992_33_14
Type: TC
Location: 21916 - 23241 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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