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Cluster: HRGMv2_3992_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3992_220 HRGMv2_3992_220_21 21210 22049 + GH16_3
NULL(UNKNOWN) HRGMv2_3992_220 HRGMv2_3992_220_22 22062 22295 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3992_220 HRGMv2_3992_220_23 22337 25249 + 1.B.14.6.2
TC HRGMv2_3992_220 HRGMv2_3992_220_24 25262 26932 + 8.A.46.2.2
NULL(UNKNOWN) HRGMv2_3992_220 HRGMv2_3992_220_25 26960 28213 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3992_220 HRGMv2_3992_220_26 28220 30541 + GH3
STP HRGMv2_3992_220 HRGMv2_3992_220_27 31124 31666 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_3992_220 HRGMv2_3992_220_28 31668 32612 + FecR
TC HRGMv2_3992_220 HRGMv2_3992_220_29 32667 35939 + 1.B.14.6.1
TC HRGMv2_3992_220 HRGMv2_3992_220_30 35958 37652 + 8.A.46.1.1
Gene ID: HRGMv2_3992_220_21
Type: CAZyme
Location: 21210 - 22049 (+)
Gene ID: HRGMv2_3992_220_22
Type:
Location: 22062 - 22295 (+)
Gene ID: HRGMv2_3992_220_23
Type: TC
Location: 22337 - 25249 (+)
Gene ID: HRGMv2_3992_220_24
Type: TC
Location: 25262 - 26932 (+)
Gene ID: HRGMv2_3992_220_25
Type:
Location: 26960 - 28213 (+)
Gene ID: HRGMv2_3992_220_26
Type: CAZyme
Location: 28220 - 30541 (+)
Gene ID: HRGMv2_3992_220_27
Type: STP
Location: 31124 - 31666 (+)
Gene ID: HRGMv2_3992_220_28
Type: STP
Location: 31668 - 32612 (+)
Gene ID: HRGMv2_3992_220_29
Type: TC
Location: 32667 - 35939 (+)
Gene ID: HRGMv2_3992_220_30
Type: TC
Location: 35958 - 37652 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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