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Cluster: HRGMv2_3992_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3992_166 HRGMv2_3992_166_1 188 1876 + 2.A.81.1.2
pfam HRGMv2_3992_166 HRGMv2_3992_166_2 1998 2963 + OAD_gamma
pfam HRGMv2_3992_166 HRGMv2_3992_166_3 3046 3504 + Biotin_lipoyl | Biotin_lipoyl_2
TC HRGMv2_3992_166 HRGMv2_3992_166_4 3646 4803 + 3.B.1.1.2
TF HRGMv2_3992_166 HRGMv2_3992_166_5 4920 5513 + GerE
CAZyme HRGMv2_3992_166 HRGMv2_3992_166_6 5841 7214 - GH28
TC HRGMv2_3992_166 HRGMv2_3992_166_7 7326 8822 - 2.A.17.1.6
Gene ID: HRGMv2_3992_166_1
Type: TC
Location: 188 - 1876 (+)
Gene ID: HRGMv2_3992_166_2
Type: pfam
Location: 1998 - 2963 (+)
Gene ID: HRGMv2_3992_166_3
Type: pfam
Location: 3046 - 3504 (+)
Gene ID: HRGMv2_3992_166_4
Type: TC
Location: 3646 - 4803 (+)
Gene ID: HRGMv2_3992_166_5
Type: TF
Location: 4920 - 5513 (+)
Gene ID: HRGMv2_3992_166_6
Type: CAZyme
Location: 5841 - 7214 (-)
Gene ID: HRGMv2_3992_166_7
Type: TC
Location: 7326 - 8822 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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