Cluster: HRGMv2_3992_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3992
- CGC Family ID: CGCFAM_09653
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3992_161 | HRGMv2_3992_161_10 | 11310 | 13181 | - | 1.C.39.4.5 |
| NULL(UNKNOWN) | HRGMv2_3992_161 | HRGMv2_3992_161_11 | 13531 | 14208 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3992_161 | HRGMv2_3992_161_12 | 14248 | 16230 | + | 3.D.10.1.5 |
| NULL(UNKNOWN) | HRGMv2_3992_161 | HRGMv2_3992_161_13 | 16236 | 16337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3992_161 | HRGMv2_3992_161_14 | 16309 | 17064 | + | 3.D.10.1.5 |
| pfam | HRGMv2_3992_161 | HRGMv2_3992_161_15 | 17777 | 18202 | + | HSP20 |
| NULL(UNKNOWN) | HRGMv2_3992_161 | HRGMv2_3992_161_16 | 18240 | 18404 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3992_161 | HRGMv2_3992_161_17 | 18762 | 20111 | + | 2.A.66.1.2 |
| pfam | HRGMv2_3992_161 | HRGMv2_3992_161_18 | 20301 | 21989 | + | DUF6377 |
| CAZyme | HRGMv2_3992_161 | HRGMv2_3992_161_19 | 22264 | 23922 | - | GH78 |
| peptidase | HRGMv2_3992_161 | HRGMv2_3992_161_20 | 24007 | 25614 | - | S09.UPW |
| CAZyme | HRGMv2_3992_161 | HRGMv2_3992_161_21 | 25939 | 28287 | - | GH3 |
Gene ID: HRGMv2_3992_161_10
Type: TC
Location: 11310 - 13181 (-)
Type: TC
Location: 11310 - 13181 (-)
Gene ID: HRGMv2_3992_161_11
Type:
Location: 13531 - 14208 (+)
Type:
Location: 13531 - 14208 (+)
Gene ID: HRGMv2_3992_161_12
Type: TC
Location: 14248 - 16230 (+)
Type: TC
Location: 14248 - 16230 (+)
Gene ID: HRGMv2_3992_161_13
Type:
Location: 16236 - 16337 (+)
Type:
Location: 16236 - 16337 (+)
Gene ID: HRGMv2_3992_161_14
Type: TC
Location: 16309 - 17064 (+)
Type: TC
Location: 16309 - 17064 (+)
Gene ID: HRGMv2_3992_161_15
Type: pfam
Location: 17777 - 18202 (+)
Type: pfam
Location: 17777 - 18202 (+)
Gene ID: HRGMv2_3992_161_16
Type:
Location: 18240 - 18404 (+)
Type:
Location: 18240 - 18404 (+)
Gene ID: HRGMv2_3992_161_17
Type: TC
Location: 18762 - 20111 (+)
Type: TC
Location: 18762 - 20111 (+)
Gene ID: HRGMv2_3992_161_18
Type: pfam
Location: 20301 - 21989 (+)
Type: pfam
Location: 20301 - 21989 (+)
Gene ID: HRGMv2_3992_161_19
Type: CAZyme
Location: 22264 - 23922 (-)
Type: CAZyme
Location: 22264 - 23922 (-)
Gene ID: HRGMv2_3992_161_20
Type: peptidase
Location: 24007 - 25614 (-)
Type: peptidase
Location: 24007 - 25614 (-)
Gene ID: HRGMv2_3992_161_21
Type: CAZyme
Location: 25939 - 28287 (-)
Type: CAZyme
Location: 25939 - 28287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp902491375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.