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Cluster: HRGMv2_3991_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3991_9 HRGMv2_3991_9_25 22131 24500 + 8.A.3.3.4
TC HRGMv2_3991_9 HRGMv2_3991_9_26 24490 25293 + 1.B.18.3.3
pfam HRGMv2_3991_9 HRGMv2_3991_9_27 25306 27261 + GHMP_kinases_N | NTP_transferase
pfam HRGMv2_3991_9 HRGMv2_3991_9_28 27255 28187 + Exo_endo_phos | Exo_endo_phos_3
TC HRGMv2_3991_9 HRGMv2_3991_9_29 28248 29768 - 2.A.17.1.6
pfam HRGMv2_3991_9 HRGMv2_3991_9_30 29823 30569 - OMP_b-brl_2
CAZyme HRGMv2_3991_9 HRGMv2_3991_9_31 30574 31923 - CBM50
Gene ID: HRGMv2_3991_9_25
Type: TC
Location: 22131 - 24500 (+)
Gene ID: HRGMv2_3991_9_26
Type: TC
Location: 24490 - 25293 (+)
Gene ID: HRGMv2_3991_9_27
Type: pfam
Location: 25306 - 27261 (+)
Gene ID: HRGMv2_3991_9_28
Type: pfam
Location: 27255 - 28187 (+)
Gene ID: HRGMv2_3991_9_29
Type: TC
Location: 28248 - 29768 (-)
Gene ID: HRGMv2_3991_9_30
Type: pfam
Location: 29823 - 30569 (-)
Gene ID: HRGMv2_3991_9_31
Type: CAZyme
Location: 30574 - 31923 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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