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Cluster: HRGMv2_3990_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3990_54 HRGMv2_3990_54_2 591 2195 - 2.A.21.3.19
STP HRGMv2_3990_54 HRGMv2_3990_54_3 2360 5500 - B12-binding | B12-binding_2
CAZyme HRGMv2_3990_54 HRGMv2_3990_54_4 5646 7889 - GH31_3
CAZyme HRGMv2_3990_54 HRGMv2_3990_54_5 8408 10219 - GH141
TC HRGMv2_3990_54 HRGMv2_3990_54_6 10376 12256 - 3.A.18.1.1
pfam HRGMv2_3990_54 HRGMv2_3990_54_7 12481 13029 + Lysine_decarbox | LDcluster4
TC HRGMv2_3990_54 HRGMv2_3990_54_8 13193 14371 - 2.A.23.2.11
Gene ID: HRGMv2_3990_54_2
Type: TC
Location: 591 - 2195 (-)
Gene ID: HRGMv2_3990_54_3
Type: STP
Location: 2360 - 5500 (-)
Gene ID: HRGMv2_3990_54_4
Type: CAZyme
Location: 5646 - 7889 (-)
Gene ID: HRGMv2_3990_54_5
Type: CAZyme
Location: 8408 - 10219 (-)
Gene ID: HRGMv2_3990_54_6
Type: TC
Location: 10376 - 12256 (-)
Gene ID: HRGMv2_3990_54_7
Type: pfam
Location: 12481 - 13029 (+)
Gene ID: HRGMv2_3990_54_8
Type: TC
Location: 13193 - 14371 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3990_54_3 vegetarian > vegan 1.05672 0.02034

🧭 Explore Read Mapping of CGC

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