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Cluster: HRGMv2_3988_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3988_52 HRGMv2_3988_52_9 6290 9325 + 1.B.14.6.1
pfam HRGMv2_3988_52 HRGMv2_3988_52_10 9355 10914 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_3988_52 HRGMv2_3988_52_11 10947 13055 + CBM32 | GH43_28
CAZyme HRGMv2_3988_52 HRGMv2_3988_52_12 13081 14445 + GH144
CAZyme HRGMv2_3988_52 HRGMv2_3988_52_13 14578 16740 + GH3
CAZyme HRGMv2_3988_52 HRGMv2_3988_52_14 16879 18033 + GH172
CAZyme HRGMv2_3988_52 HRGMv2_3988_52_15 18081 19793 + CBM32 | GH43_28
Gene ID: HRGMv2_3988_52_9
Type: TC
Location: 6290 - 9325 (+)
Gene ID: HRGMv2_3988_52_10
Type: pfam
Location: 9355 - 10914 (+)
Gene ID: HRGMv2_3988_52_11
Type: CAZyme
Location: 10947 - 13055 (+)
Gene ID: HRGMv2_3988_52_12
Type: CAZyme
Location: 13081 - 14445 (+)
Gene ID: HRGMv2_3988_52_13
Type: CAZyme
Location: 14578 - 16740 (+)
Gene ID: HRGMv2_3988_52_14
Type: CAZyme
Location: 16879 - 18033 (+)
Gene ID: HRGMv2_3988_52_15
Type: CAZyme
Location: 18081 - 19793 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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