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Cluster: HRGMv2_3988_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3988_34 HRGMv2_3988_34_33 25690 27153 - GT35
CAZyme HRGMv2_3988_34 HRGMv2_3988_34_34 27191 28507 - GT3
pfam HRGMv2_3988_34 HRGMv2_3988_34_35 28645 28848 - Glycogen_syn
NULL(UNKNOWN) HRGMv2_3988_34 HRGMv2_3988_34_36 28970 29362 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3988_34 HRGMv2_3988_34_37 29380 30147 - 2.A.2.6.2
TC HRGMv2_3988_34 HRGMv2_3988_34_38 30531 31595 + 2.A.98.1.3
NULL(UNKNOWN) HRGMv2_3988_34 HRGMv2_3988_34_39 31673 31933 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3988_34 HRGMv2_3988_34_40 32334 33725 + CHU_C
CAZyme HRGMv2_3988_34 HRGMv2_3988_34_41 33682 34596 + GH23
Gene ID: HRGMv2_3988_34_33
Type: CAZyme
Location: 25690 - 27153 (-)
Gene ID: HRGMv2_3988_34_34
Type: CAZyme
Location: 27191 - 28507 (-)
Gene ID: HRGMv2_3988_34_35
Type: pfam
Location: 28645 - 28848 (-)
Gene ID: HRGMv2_3988_34_36
Type:
Location: 28970 - 29362 (-)
Gene ID: HRGMv2_3988_34_37
Type: TC
Location: 29380 - 30147 (-)
Gene ID: HRGMv2_3988_34_38
Type: TC
Location: 30531 - 31595 (+)
Gene ID: HRGMv2_3988_34_39
Type:
Location: 31673 - 31933 (-)
Gene ID: HRGMv2_3988_34_40
Type: pfam
Location: 32334 - 33725 (+)
Gene ID: HRGMv2_3988_34_41
Type: CAZyme
Location: 33682 - 34596 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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