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Cluster: HRGMv2_3988_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3988_96 HRGMv2_3988_96_34 28202 29554 + GH29
pfam HRGMv2_3988_96 HRGMv2_3988_96_35 29551 32163 + Transglut_core
CAZyme HRGMv2_3988_96 HRGMv2_3988_96_36 32199 34391 - CBM32
pfam HRGMv2_3988_96 HRGMv2_3988_96_37 35033 35608 + Cytidylate_kin2
TC HRGMv2_3988_96 HRGMv2_3988_96_38 35619 35975 + 1.E.14.1.15
TC HRGMv2_3988_96 HRGMv2_3988_96_39 35975 36667 + 2.A.122.1.2
TC HRGMv2_3988_96 HRGMv2_3988_96_40 36709 37077 - 2.A.124.1.2
Gene ID: HRGMv2_3988_96_34
Type: CAZyme
Location: 28202 - 29554 (+)
Gene ID: HRGMv2_3988_96_35
Type: pfam
Location: 29551 - 32163 (+)
Gene ID: HRGMv2_3988_96_36
Type: CAZyme
Location: 32199 - 34391 (-)
Gene ID: HRGMv2_3988_96_37
Type: pfam
Location: 35033 - 35608 (+)
Gene ID: HRGMv2_3988_96_38
Type: TC
Location: 35619 - 35975 (+)
Gene ID: HRGMv2_3988_96_39
Type: TC
Location: 35975 - 36667 (+)
Gene ID: HRGMv2_3988_96_40
Type: TC
Location: 36709 - 37077 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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