Cluster: HRGMv2_3988_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3988
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3988_80 | HRGMv2_3988_80_4 | 1975 | 3120 | + | 9.B.146.1.6 |
| pfam | HRGMv2_3988_80 | HRGMv2_3988_80_5 | 3236 | 4588 | + | Mur_ligase_C | Mur_ligase_M | MurD_N |
| NULL(UNKNOWN) | HRGMv2_3988_80 | HRGMv2_3988_80_6 | 4591 | 4908 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3988_80 | HRGMv2_3988_80_7 | 4905 | 5900 | + | 2.A.103.1.3 |
| pfam | HRGMv2_3988_80 | HRGMv2_3988_80_8 | 5897 | 6262 | + | Glyco_transf_28 |
| CAZyme | HRGMv2_3988_80 | HRGMv2_3988_80_9 | 6223 | 6999 | + | GT28 |
Gene ID: HRGMv2_3988_80_4
Type: TC
Location: 1975 - 3120 (+)
Type: TC
Location: 1975 - 3120 (+)
Gene ID: HRGMv2_3988_80_5
Type: pfam
Location: 3236 - 4588 (+)
Type: pfam
Location: 3236 - 4588 (+)
Gene ID: HRGMv2_3988_80_6
Type:
Location: 4591 - 4908 (+)
Type:
Location: 4591 - 4908 (+)
Gene ID: HRGMv2_3988_80_7
Type: TC
Location: 4905 - 5900 (+)
Type: TC
Location: 4905 - 5900 (+)
Gene ID: HRGMv2_3988_80_8
Type: pfam
Location: 5897 - 6262 (+)
Type: pfam
Location: 5897 - 6262 (+)
Gene ID: HRGMv2_3988_80_9
Type: CAZyme
Location: 6223 - 6999 (+)
Type: CAZyme
Location: 6223 - 6999 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Species
Limisoma faecipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.