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Cluster: HRGMv2_3988_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3988_78 HRGMv2_3988_78_55 43824 44723 + 3.A.1.105.15
TC HRGMv2_3988_78 HRGMv2_3988_78_56 44730 45470 + 3.A.1.105.15
NULL(UNKNOWN) HRGMv2_3988_78 HRGMv2_3988_78_57 45474 45740 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3988_78 HRGMv2_3988_78_58 45737 46567 + 3.A.1.105.4
TC HRGMv2_3988_78 HRGMv2_3988_78_59 46574 47680 + 3.A.1.105.4
TF HRGMv2_3988_78 HRGMv2_3988_78_60 47820 48302 + HTH_AraC
pfam HRGMv2_3988_78 HRGMv2_3988_78_61 48293 49000 - Hydrolase | Hydrolase_like | HAD_2
TC HRGMv2_3988_78 HRGMv2_3988_78_62 49000 49680 - 2.A.88.8.1
CAZyme HRGMv2_3988_78 HRGMv2_3988_78_63 49788 50981 - CE1
CAZyme HRGMv2_3988_78 HRGMv2_3988_78_64 50998 53325 - GH133
Gene ID: HRGMv2_3988_78_55
Type: TC
Location: 43824 - 44723 (+)
Gene ID: HRGMv2_3988_78_56
Type: TC
Location: 44730 - 45470 (+)
Gene ID: HRGMv2_3988_78_57
Type:
Location: 45474 - 45740 (+)
Gene ID: HRGMv2_3988_78_58
Type: TC
Location: 45737 - 46567 (+)
Gene ID: HRGMv2_3988_78_59
Type: TC
Location: 46574 - 47680 (+)
Gene ID: HRGMv2_3988_78_60
Type: TF
Location: 47820 - 48302 (+)
Gene ID: HRGMv2_3988_78_61
Type: pfam
Location: 48293 - 49000 (-)
Gene ID: HRGMv2_3988_78_62
Type: TC
Location: 49000 - 49680 (-)
Gene ID: HRGMv2_3988_78_63
Type: CAZyme
Location: 49788 - 50981 (-)
Gene ID: HRGMv2_3988_78_64
Type: CAZyme
Location: 50998 - 53325 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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