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Cluster: HRGMv2_3985_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_485 533769 535637 - GH13_46
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_486 535650 536930 - GH13
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_487 537004 538356 - GH13
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_488 538367 540484 - GH13
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_489 540523 541737 - GH53
CAZyme HRGMv2_3985_1 HRGMv2_3985_1_490 541781 544078 - GH13_36
pfam HRGMv2_3985_1 HRGMv2_3985_1_491 544229 546274 - SusE
TC HRGMv2_3985_1 HRGMv2_3985_1_492 546308 547909 - 8.A.46.1.1
TC HRGMv2_3985_1 HRGMv2_3985_1_493 547931 550996 - 1.B.14.6.1
TC HRGMv2_3985_1 HRGMv2_3985_1_494 551153 552439 - 2.A.2.6.2
TC HRGMv2_3985_1 HRGMv2_3985_1_495 552488 554083 + 8.A.59.2.1
TF HRGMv2_3985_1 HRGMv2_3985_1_496 554080 554850 + LytTR
pfam HRGMv2_3985_1 HRGMv2_3985_1_497 555176 555967 + Poly_export | SLBB | SLBB_2
TC HRGMv2_3985_1 HRGMv2_3985_1_498 555984 558410 + 8.A.3.3.4
Gene ID: HRGMv2_3985_1_485
Type: CAZyme
Location: 533769 - 535637 (-)
Gene ID: HRGMv2_3985_1_486
Type: CAZyme
Location: 535650 - 536930 (-)
Gene ID: HRGMv2_3985_1_487
Type: CAZyme
Location: 537004 - 538356 (-)
Gene ID: HRGMv2_3985_1_488
Type: CAZyme
Location: 538367 - 540484 (-)
Gene ID: HRGMv2_3985_1_489
Type: CAZyme
Location: 540523 - 541737 (-)
Gene ID: HRGMv2_3985_1_490
Type: CAZyme
Location: 541781 - 544078 (-)
Gene ID: HRGMv2_3985_1_491
Type: pfam
Location: 544229 - 546274 (-)
Gene ID: HRGMv2_3985_1_492
Type: TC
Location: 546308 - 547909 (-)
Gene ID: HRGMv2_3985_1_493
Type: TC
Location: 547931 - 550996 (-)
Gene ID: HRGMv2_3985_1_494
Type: TC
Location: 551153 - 552439 (-)
Gene ID: HRGMv2_3985_1_495
Type: TC
Location: 552488 - 554083 (+)
Gene ID: HRGMv2_3985_1_496
Type: TF
Location: 554080 - 554850 (+)
Gene ID: HRGMv2_3985_1_497
Type: pfam
Location: 555176 - 555967 (+)
Gene ID: HRGMv2_3985_1_498
Type: TC
Location: 555984 - 558410 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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