Cluster: HRGMv2_3985_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3985
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3985_7 | HRGMv2_3985_7_22 | 25301 | 27781 | - | GH3 |
| CAZyme | HRGMv2_3985_7 | HRGMv2_3985_7_23 | 27952 | 30285 | - | GH3 |
| CAZyme | HRGMv2_3985_7 | HRGMv2_3985_7_24 | 30296 | 31486 | - | CE1 |
| CAZyme | HRGMv2_3985_7 | HRGMv2_3985_7_25 | 31582 | 33240 | - | CE1 |
| pfam | HRGMv2_3985_7 | HRGMv2_3985_7_26 | 33264 | 34838 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3985_7 | HRGMv2_3985_7_27 | 34857 | 37901 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3985_7_22
Type: CAZyme
Location: 25301 - 27781 (-)
Type: CAZyme
Location: 25301 - 27781 (-)
Gene ID: HRGMv2_3985_7_23
Type: CAZyme
Location: 27952 - 30285 (-)
Type: CAZyme
Location: 27952 - 30285 (-)
Gene ID: HRGMv2_3985_7_24
Type: CAZyme
Location: 30296 - 31486 (-)
Type: CAZyme
Location: 30296 - 31486 (-)
Gene ID: HRGMv2_3985_7_25
Type: CAZyme
Location: 31582 - 33240 (-)
Type: CAZyme
Location: 31582 - 33240 (-)
Gene ID: HRGMv2_3985_7_26
Type: pfam
Location: 33264 - 34838 (-)
Type: pfam
Location: 33264 - 34838 (-)
Gene ID: HRGMv2_3985_7_27
Type: TC
Location: 34857 - 37901 (-)
Type: TC
Location: 34857 - 37901 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp002362235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.