Cluster: HRGMv2_3985_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3985
- CGC Family ID: CGCFAM_00607
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3985_6 | HRGMv2_3985_6_65 | 68953 | 69849 | + | 2.A.7.3.57 |
| pfam | HRGMv2_3985_6 | HRGMv2_3985_6_66 | 70004 | 72472 | + | tRNA_bind | FDX-ACB | B3_4 | B5 | tRNA_synthFbeta |
| CAZyme | HRGMv2_3985_6 | HRGMv2_3985_6_67 | 72605 | 74764 | - | GH20 |
| pfam | HRGMv2_3985_6 | HRGMv2_3985_6_68 | 74855 | 75631 | + | PRA-PH | MazG | MazG |
| pfam | HRGMv2_3985_6 | HRGMv2_3985_6_69 | 75669 | 76208 | + | Hexapep | Hexapep |
| TC | HRGMv2_3985_6 | HRGMv2_3985_6_70 | 76227 | 77576 | + | 9.B.33.1.2 |
Gene ID: HRGMv2_3985_6_65
Type: TC
Location: 68953 - 69849 (+)
Type: TC
Location: 68953 - 69849 (+)
Gene ID: HRGMv2_3985_6_66
Type: pfam
Location: 70004 - 72472 (+)
Type: pfam
Location: 70004 - 72472 (+)
Gene ID: HRGMv2_3985_6_67
Type: CAZyme
Location: 72605 - 74764 (-)
Type: CAZyme
Location: 72605 - 74764 (-)
Gene ID: HRGMv2_3985_6_68
Type: pfam
Location: 74855 - 75631 (+)
Type: pfam
Location: 74855 - 75631 (+)
Gene ID: HRGMv2_3985_6_69
Type: pfam
Location: 75669 - 76208 (+)
Type: pfam
Location: 75669 - 76208 (+)
Gene ID: HRGMv2_3985_6_70
Type: TC
Location: 76227 - 77576 (+)
Type: TC
Location: 76227 - 77576 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp002362235
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3985_6_68 | vegan > omnivore | 1.65966 | 0.03761 |