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Cluster: HRGMv2_3983_CGC99

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_21 HRGMv2_3983_21_41 46232 48841 + GH147
TC HRGMv2_3983_21 HRGMv2_3983_21_42 49052 52027 + 1.B.14.6.1
TC HRGMv2_3983_21 HRGMv2_3983_21_43 52046 53650 + 8.A.46.1.1
pfam HRGMv2_3983_21 HRGMv2_3983_21_44 53674 55437 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_3983_21 HRGMv2_3983_21_45 55451 56545 + GH53
CAZyme HRGMv2_3983_21 HRGMv2_3983_21_46 56617 59061 + GH2
pfam HRGMv2_3983_21 HRGMv2_3983_21_47 59204 60235 - Exo_endo_phos
pfam HRGMv2_3983_21 HRGMv2_3983_21_48 60265 60951 - TrkA_N | F420_oxidored
TC HRGMv2_3983_21 HRGMv2_3983_21_49 60956 62785 - 2.A.38.4.3
Gene ID: HRGMv2_3983_21_41
Type: CAZyme
Location: 46232 - 48841 (+)
Gene ID: HRGMv2_3983_21_42
Type: TC
Location: 49052 - 52027 (+)
Gene ID: HRGMv2_3983_21_43
Type: TC
Location: 52046 - 53650 (+)
Gene ID: HRGMv2_3983_21_44
Type: pfam
Location: 53674 - 55437 (+)
Gene ID: HRGMv2_3983_21_45
Type: CAZyme
Location: 55451 - 56545 (+)
Gene ID: HRGMv2_3983_21_46
Type: CAZyme
Location: 56617 - 59061 (+)
Gene ID: HRGMv2_3983_21_47
Type: pfam
Location: 59204 - 60235 (-)
Gene ID: HRGMv2_3983_21_48
Type: pfam
Location: 60265 - 60951 (-)
Gene ID: HRGMv2_3983_21_49
Type: TC
Location: 60956 - 62785 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_21_45 vegan > omnivore 1.00530 0.00229

🧭 Explore Read Mapping of CGC

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