Cluster: HRGMv2_3983_CGC94
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_02823
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_20 | HRGMv2_3983_20_21 | 41268 | 44966 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_3983_20 | HRGMv2_3983_20_22 | 45128 | 45256 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_20 | HRGMv2_3983_20_23 | 45576 | 48107 | - | GH3 |
| CAZyme | HRGMv2_3983_20 | HRGMv2_3983_20_24 | 48343 | 50058 | - | CE20 |
| CAZyme | HRGMv2_3983_20 | HRGMv2_3983_20_25 | 50089 | 52953 | - | GH3 |
| CAZyme | HRGMv2_3983_20 | HRGMv2_3983_20_26 | 52994 | 55102 | - | GH43_2 | GH43_2 | GH43_2 |
| pfam | HRGMv2_3983_20 | HRGMv2_3983_20_27 | 55357 | 56379 | + | WYL |
| pfam | HRGMv2_3983_20 | HRGMv2_3983_20_28 | 56506 | 57351 | - | Patatin | DUF6363 |
| TC | HRGMv2_3983_20 | HRGMv2_3983_20_29 | 57348 | 59558 | - | 2.A.37.4.2 |
Gene ID: HRGMv2_3983_20_21
Type: CAZyme
Location: 41268 - 44966 (+)
Type: CAZyme
Location: 41268 - 44966 (+)
Gene ID: HRGMv2_3983_20_22
Type:
Location: 45128 - 45256 (-)
Type:
Location: 45128 - 45256 (-)
Gene ID: HRGMv2_3983_20_23
Type: CAZyme
Location: 45576 - 48107 (-)
Type: CAZyme
Location: 45576 - 48107 (-)
Gene ID: HRGMv2_3983_20_24
Type: CAZyme
Location: 48343 - 50058 (-)
Type: CAZyme
Location: 48343 - 50058 (-)
Gene ID: HRGMv2_3983_20_25
Type: CAZyme
Location: 50089 - 52953 (-)
Type: CAZyme
Location: 50089 - 52953 (-)
Gene ID: HRGMv2_3983_20_26
Type: CAZyme
Location: 52994 - 55102 (-)
Type: CAZyme
Location: 52994 - 55102 (-)
Gene ID: HRGMv2_3983_20_27
Type: pfam
Location: 55357 - 56379 (+)
Type: pfam
Location: 55357 - 56379 (+)
Gene ID: HRGMv2_3983_20_28
Type: pfam
Location: 56506 - 57351 (-)
Type: pfam
Location: 56506 - 57351 (-)
Gene ID: HRGMv2_3983_20_29
Type: TC
Location: 57348 - 59558 (-)
Type: TC
Location: 57348 - 59558 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_20_21 | vegan > omnivore | 1.08830 | 0.00229 |
| HRGMv2_3983_20_23 | vegan > omnivore | 1.00562 | 0.00229 |
| HRGMv2_3983_20_26 | vegetarian > omnivore | 1.47809 | 0.03385 |