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Cluster: HRGMv2_3983_CGC92

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_19 HRGMv2_3983_19_89 142534 145521 + 1.B.14.6.1
TC HRGMv2_3983_19 HRGMv2_3983_19_90 145534 147105 + 8.A.46.1.1
pfam HRGMv2_3983_19 HRGMv2_3983_19_91 147118 148287 + SusE
pfam HRGMv2_3983_19 HRGMv2_3983_19_92 148296 149858 + SusE
CAZyme HRGMv2_3983_19 HRGMv2_3983_19_93 149879 151240 + GH13
CAZyme HRGMv2_3983_19 HRGMv2_3983_19_94 151253 152665 + GH28
CAZyme HRGMv2_3983_19 HRGMv2_3983_19_95 152689 154134 + CE20
CAZyme HRGMv2_3983_19 HRGMv2_3983_19_96 154165 156363 + GH92
Gene ID: HRGMv2_3983_19_89
Type: TC
Location: 142534 - 145521 (+)
Gene ID: HRGMv2_3983_19_90
Type: TC
Location: 145534 - 147105 (+)
Gene ID: HRGMv2_3983_19_91
Type: pfam
Location: 147118 - 148287 (+)
Gene ID: HRGMv2_3983_19_92
Type: pfam
Location: 148296 - 149858 (+)
Gene ID: HRGMv2_3983_19_93
Type: CAZyme
Location: 149879 - 151240 (+)
Gene ID: HRGMv2_3983_19_94
Type: CAZyme
Location: 151253 - 152665 (+)
Gene ID: HRGMv2_3983_19_95
Type: CAZyme
Location: 152689 - 154134 (+)
Gene ID: HRGMv2_3983_19_96
Type: CAZyme
Location: 154165 - 156363 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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