Cluster: HRGMv2_3983_CGC90
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_02826
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_19 | HRGMv2_3983_19_55 | 88321 | 90198 | - | 2.A.21.3.8 |
| pfam | HRGMv2_3983_19 | HRGMv2_3983_19_56 | 90438 | 91700 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_3983_19 | HRGMv2_3983_19_57 | 91773 | 92957 | - | GH130_1 |
| NULL(UNKNOWN) | HRGMv2_3983_19 | HRGMv2_3983_19_58 | 93095 | 94279 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_19 | HRGMv2_3983_19_59 | 94305 | 95870 | - | GH30_6 |
| pfam | HRGMv2_3983_19 | HRGMv2_3983_19_60 | 95905 | 97530 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_19 | HRGMv2_3983_19_61 | 97569 | 100634 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3983_19 | HRGMv2_3983_19_62 | 101164 | 102375 | + | AAA_14 | DUF4143 |
| pfam | HRGMv2_3983_19 | HRGMv2_3983_19_63 | 102445 | 103803 | - | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_3983_19 | HRGMv2_3983_19_64 | 104069 | 105259 | - | GH130_1 |
| NULL(UNKNOWN) | HRGMv2_3983_19 | HRGMv2_3983_19_65 | 105337 | 106767 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_19 | HRGMv2_3983_19_66 | 106786 | 108351 | - | GH30_6 |
| TC | HRGMv2_3983_19 | HRGMv2_3983_19_67 | 108377 | 110113 | - | 8.A.46.1.3 |
| TC | HRGMv2_3983_19 | HRGMv2_3983_19_68 | 110147 | 113200 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3983_19_55
Type: TC
Location: 88321 - 90198 (-)
Type: TC
Location: 88321 - 90198 (-)
Gene ID: HRGMv2_3983_19_56
Type: pfam
Location: 90438 - 91700 (+)
Type: pfam
Location: 90438 - 91700 (+)
Gene ID: HRGMv2_3983_19_57
Type: CAZyme
Location: 91773 - 92957 (-)
Type: CAZyme
Location: 91773 - 92957 (-)
Gene ID: HRGMv2_3983_19_58
Type:
Location: 93095 - 94279 (-)
Type:
Location: 93095 - 94279 (-)
Gene ID: HRGMv2_3983_19_59
Type: CAZyme
Location: 94305 - 95870 (-)
Type: CAZyme
Location: 94305 - 95870 (-)
Gene ID: HRGMv2_3983_19_60
Type: pfam
Location: 95905 - 97530 (-)
Type: pfam
Location: 95905 - 97530 (-)
Gene ID: HRGMv2_3983_19_61
Type: TC
Location: 97569 - 100634 (-)
Type: TC
Location: 97569 - 100634 (-)
Gene ID: HRGMv2_3983_19_62
Type: pfam
Location: 101164 - 102375 (+)
Type: pfam
Location: 101164 - 102375 (+)
Gene ID: HRGMv2_3983_19_63
Type: pfam
Location: 102445 - 103803 (-)
Type: pfam
Location: 102445 - 103803 (-)
Gene ID: HRGMv2_3983_19_64
Type: CAZyme
Location: 104069 - 105259 (-)
Type: CAZyme
Location: 104069 - 105259 (-)
Gene ID: HRGMv2_3983_19_65
Type:
Location: 105337 - 106767 (-)
Type:
Location: 105337 - 106767 (-)
Gene ID: HRGMv2_3983_19_66
Type: CAZyme
Location: 106786 - 108351 (-)
Type: CAZyme
Location: 106786 - 108351 (-)
Gene ID: HRGMv2_3983_19_67
Type: TC
Location: 108377 - 110113 (-)
Type: TC
Location: 108377 - 110113 (-)
Gene ID: HRGMv2_3983_19_68
Type: TC
Location: 110147 - 113200 (-)
Type: TC
Location: 110147 - 113200 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.