Cluster: HRGMv2_3983_CGC85
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_03108
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_18 | HRGMv2_3983_18_75 | 102297 | 106496 | - | CBM57 | CBM97 | GH137 | GH2 |
| CAZyme | HRGMv2_3983_18 | HRGMv2_3983_18_76 | 106548 | 109247 | - | GH138 |
| TC | HRGMv2_3983_18 | HRGMv2_3983_18_77 | 109468 | 111900 | + | 2.A.21.9.2 |
| pfam | HRGMv2_3983_18 | HRGMv2_3983_18_78 | 112020 | 112781 | - | Fer4_19 | zf-CDGSH | zf-CDGSH |
| NULL(UNKNOWN) | HRGMv2_3983_18 | HRGMv2_3983_18_79 | 113154 | 113291 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_18 | HRGMv2_3983_18_80 | 113390 | 114928 | - | GH165 |
| pfam | HRGMv2_3983_18 | HRGMv2_3983_18_81 | 114951 | 116513 | - | PKD | PQQ_2 | PQQ_2 | PQQ_2 | PKD_4 |
| CAZyme | HRGMv2_3983_18 | HRGMv2_3983_18_82 | 116526 | 118241 | - | GH165 |
| CAZyme | HRGMv2_3983_18 | HRGMv2_3983_18_83 | 118256 | 119938 | - | GH165 |
| sulfatase | HRGMv2_3983_18 | HRGMv2_3983_18_84 | 119954 | 121702 | - | S1_27 |
| TC | HRGMv2_3983_18 | HRGMv2_3983_18_85 | 121723 | 124971 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3983_18_75
Type: CAZyme
Location: 102297 - 106496 (-)
Type: CAZyme
Location: 102297 - 106496 (-)
Gene ID: HRGMv2_3983_18_76
Type: CAZyme
Location: 106548 - 109247 (-)
Type: CAZyme
Location: 106548 - 109247 (-)
Gene ID: HRGMv2_3983_18_77
Type: TC
Location: 109468 - 111900 (+)
Type: TC
Location: 109468 - 111900 (+)
Gene ID: HRGMv2_3983_18_78
Type: pfam
Location: 112020 - 112781 (-)
Type: pfam
Location: 112020 - 112781 (-)
Gene ID: HRGMv2_3983_18_79
Type:
Location: 113154 - 113291 (-)
Type:
Location: 113154 - 113291 (-)
Gene ID: HRGMv2_3983_18_80
Type: CAZyme
Location: 113390 - 114928 (-)
Type: CAZyme
Location: 113390 - 114928 (-)
Gene ID: HRGMv2_3983_18_81
Type: pfam
Location: 114951 - 116513 (-)
Type: pfam
Location: 114951 - 116513 (-)
Gene ID: HRGMv2_3983_18_82
Type: CAZyme
Location: 116526 - 118241 (-)
Type: CAZyme
Location: 116526 - 118241 (-)
Gene ID: HRGMv2_3983_18_83
Type: CAZyme
Location: 118256 - 119938 (-)
Type: CAZyme
Location: 118256 - 119938 (-)
Gene ID: HRGMv2_3983_18_84
Type: sulfatase
Location: 119954 - 121702 (-)
Type: sulfatase
Location: 119954 - 121702 (-)
Gene ID: HRGMv2_3983_18_85
Type: TC
Location: 121723 - 124971 (-)
Type: TC
Location: 121723 - 124971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_18_83 | vegetarian > omnivore | 1.29007 | 0.03246 |
| HRGMv2_3983_18_85 | vegetarian > omnivore | 1.46249 | 0.02389 |