Cluster: HRGMv2_3983_CGC83
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_04406
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_25 | 31737 | 34442 | - | 3.A.3.2.10 |
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_26 | 34533 | 35834 | - | 2.A.21.9.2 |
| pfam | HRGMv2_3983_17 | HRGMv2_3983_17_27 | 35932 | 36096 | + | Rubredoxin |
| NULL(UNKNOWN) | HRGMv2_3983_17 | HRGMv2_3983_17_28 | 36231 | 36920 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_29 | 37020 | 38717 | - | 2.A.58.2.2 |
| pfam | HRGMv2_3983_17 | HRGMv2_3983_17_30 | 38800 | 40473 | + | PRK |
| NULL(UNKNOWN) | HRGMv2_3983_17 | HRGMv2_3983_17_31 | 40690 | 41097 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_17 | HRGMv2_3983_17_32 | 41329 | 43374 | + | GH146 |
| TF | HRGMv2_3983_17 | HRGMv2_3983_17_33 | 43457 | 47473 | + | HTH_AraC |
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_34 | 47601 | 50510 | + | 1.B.14.6.1 |
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_35 | 50523 | 52124 | + | 8.A.46.1.1 |
| NULL(UNKNOWN) | HRGMv2_3983_17 | HRGMv2_3983_17_36 | 52148 | 54271 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_17 | HRGMv2_3983_17_37 | 54371 | 55678 | - | CE7 |
| peptidase | HRGMv2_3983_17 | HRGMv2_3983_17_38 | 55891 | 57264 | - | M24.UPB |
| TC | HRGMv2_3983_17 | HRGMv2_3983_17_39 | 57662 | 62470 | - | 2.A.16.2.2 |
Gene ID: HRGMv2_3983_17_25
Type: TC
Location: 31737 - 34442 (-)
Type: TC
Location: 31737 - 34442 (-)
Gene ID: HRGMv2_3983_17_26
Type: TC
Location: 34533 - 35834 (-)
Type: TC
Location: 34533 - 35834 (-)
Gene ID: HRGMv2_3983_17_27
Type: pfam
Location: 35932 - 36096 (+)
Type: pfam
Location: 35932 - 36096 (+)
Gene ID: HRGMv2_3983_17_28
Type:
Location: 36231 - 36920 (+)
Type:
Location: 36231 - 36920 (+)
Gene ID: HRGMv2_3983_17_29
Type: TC
Location: 37020 - 38717 (-)
Type: TC
Location: 37020 - 38717 (-)
Gene ID: HRGMv2_3983_17_30
Type: pfam
Location: 38800 - 40473 (+)
Type: pfam
Location: 38800 - 40473 (+)
Gene ID: HRGMv2_3983_17_31
Type:
Location: 40690 - 41097 (+)
Type:
Location: 40690 - 41097 (+)
Gene ID: HRGMv2_3983_17_32
Type: CAZyme
Location: 41329 - 43374 (+)
Type: CAZyme
Location: 41329 - 43374 (+)
Gene ID: HRGMv2_3983_17_33
Type: TF
Location: 43457 - 47473 (+)
Type: TF
Location: 43457 - 47473 (+)
Gene ID: HRGMv2_3983_17_34
Type: TC
Location: 47601 - 50510 (+)
Type: TC
Location: 47601 - 50510 (+)
Gene ID: HRGMv2_3983_17_35
Type: TC
Location: 50523 - 52124 (+)
Type: TC
Location: 50523 - 52124 (+)
Gene ID: HRGMv2_3983_17_36
Type:
Location: 52148 - 54271 (+)
Type:
Location: 52148 - 54271 (+)
Gene ID: HRGMv2_3983_17_37
Type: CAZyme
Location: 54371 - 55678 (-)
Type: CAZyme
Location: 54371 - 55678 (-)
Gene ID: HRGMv2_3983_17_38
Type: peptidase
Location: 55891 - 57264 (-)
Type: peptidase
Location: 55891 - 57264 (-)
Gene ID: HRGMv2_3983_17_39
Type: TC
Location: 57662 - 62470 (-)
Type: TC
Location: 57662 - 62470 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_17_37 | vegan > omnivore | 1.04476 | 0.00229 |