Cluster: HRGMv2_3983_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_1 | HRGMv2_3983_1_148 | 268158 | 269390 | + | 9.B.156.3.1 |
| pfam | HRGMv2_3983_1 | HRGMv2_3983_1_149 | 269407 | 269820 | + | YbeY |
| TF | HRGMv2_3983_1 | HRGMv2_3983_1_150 | 269906 | 273895 | - | HTH_AraC |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_151 | 273965 | 275704 | - | GH110 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_152 | 275718 | 277457 | - | GH110 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_153 | 277463 | 278590 | - | GH43 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_154 | 278612 | 280342 | - | GH110 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_155 | 280344 | 281906 | - | GH43_9 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_156 | 281983 | 283527 | - | GH43_9 |
| pfam | HRGMv2_3983_1 | HRGMv2_3983_1_157 | 283599 | 285023 | - | PKD | BT_3987-like_N | DUF5013 | PKD_4 |
| pfam | HRGMv2_3983_1 | HRGMv2_3983_1_158 | 285052 | 286743 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_1 | HRGMv2_3983_1_159 | 286763 | 289609 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3983_1 | HRGMv2_3983_1_160 | 289650 | 291389 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_1 | HRGMv2_3983_1_161 | 291402 | 294572 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3983_1 | HRGMv2_3983_1_162 | 295039 | 296595 | + | GH43 |
Gene ID: HRGMv2_3983_1_148
Type: TC
Location: 268158 - 269390 (+)
Type: TC
Location: 268158 - 269390 (+)
Gene ID: HRGMv2_3983_1_149
Type: pfam
Location: 269407 - 269820 (+)
Type: pfam
Location: 269407 - 269820 (+)
Gene ID: HRGMv2_3983_1_150
Type: TF
Location: 269906 - 273895 (-)
Type: TF
Location: 269906 - 273895 (-)
Gene ID: HRGMv2_3983_1_151
Type: CAZyme
Location: 273965 - 275704 (-)
Type: CAZyme
Location: 273965 - 275704 (-)
Gene ID: HRGMv2_3983_1_152
Type: CAZyme
Location: 275718 - 277457 (-)
Type: CAZyme
Location: 275718 - 277457 (-)
Gene ID: HRGMv2_3983_1_153
Type: CAZyme
Location: 277463 - 278590 (-)
Type: CAZyme
Location: 277463 - 278590 (-)
Gene ID: HRGMv2_3983_1_154
Type: CAZyme
Location: 278612 - 280342 (-)
Type: CAZyme
Location: 278612 - 280342 (-)
Gene ID: HRGMv2_3983_1_155
Type: CAZyme
Location: 280344 - 281906 (-)
Type: CAZyme
Location: 280344 - 281906 (-)
Gene ID: HRGMv2_3983_1_156
Type: CAZyme
Location: 281983 - 283527 (-)
Type: CAZyme
Location: 281983 - 283527 (-)
Gene ID: HRGMv2_3983_1_157
Type: pfam
Location: 283599 - 285023 (-)
Type: pfam
Location: 283599 - 285023 (-)
Gene ID: HRGMv2_3983_1_158
Type: pfam
Location: 285052 - 286743 (-)
Type: pfam
Location: 285052 - 286743 (-)
Gene ID: HRGMv2_3983_1_159
Type: TC
Location: 286763 - 289609 (-)
Type: TC
Location: 286763 - 289609 (-)
Gene ID: HRGMv2_3983_1_160
Type: pfam
Location: 289650 - 291389 (-)
Type: pfam
Location: 289650 - 291389 (-)
Gene ID: HRGMv2_3983_1_161
Type: TC
Location: 291402 - 294572 (-)
Type: TC
Location: 291402 - 294572 (-)
Gene ID: HRGMv2_3983_1_162
Type: CAZyme
Location: 295039 - 296595 (+)
Type: CAZyme
Location: 295039 - 296595 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.