Cluster: HRGMv2_3983_CGC77
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_16 | HRGMv2_3983_16_5 | 2643 | 4691 | + | 1.B.14.15.2 |
| STP | HRGMv2_3983_16 | HRGMv2_3983_16_6 | 4709 | 5548 | + | SBP_bac_3 |
| TF | HRGMv2_3983_16 | HRGMv2_3983_16_7 | 5535 | 9725 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3983_16 | HRGMv2_3983_16_8 | 10084 | 11340 | + | GH88 |
| CAZyme | HRGMv2_3983_16 | HRGMv2_3983_16_9 | 11362 | 13833 | + | GH2 |
| CAZyme | HRGMv2_3983_16 | HRGMv2_3983_16_10 | 13951 | 15114 | + | PL38 |
| CAZyme | HRGMv2_3983_16 | HRGMv2_3983_16_11 | 15136 | 16338 | + | PL38 |
| TC | HRGMv2_3983_16 | HRGMv2_3983_16_12 | 16360 | 19467 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3983_16_5
Type: TC
Location: 2643 - 4691 (+)
Type: TC
Location: 2643 - 4691 (+)
Gene ID: HRGMv2_3983_16_6
Type: STP
Location: 4709 - 5548 (+)
Type: STP
Location: 4709 - 5548 (+)
Gene ID: HRGMv2_3983_16_7
Type: TF
Location: 5535 - 9725 (+)
Type: TF
Location: 5535 - 9725 (+)
Gene ID: HRGMv2_3983_16_8
Type: CAZyme
Location: 10084 - 11340 (+)
Type: CAZyme
Location: 10084 - 11340 (+)
Gene ID: HRGMv2_3983_16_9
Type: CAZyme
Location: 11362 - 13833 (+)
Type: CAZyme
Location: 11362 - 13833 (+)
Gene ID: HRGMv2_3983_16_10
Type: CAZyme
Location: 13951 - 15114 (+)
Type: CAZyme
Location: 13951 - 15114 (+)
Gene ID: HRGMv2_3983_16_11
Type: CAZyme
Location: 15136 - 16338 (+)
Type: CAZyme
Location: 15136 - 16338 (+)
Gene ID: HRGMv2_3983_16_12
Type: TC
Location: 16360 - 19467 (+)
Type: TC
Location: 16360 - 19467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_16_8 | vegetarian > omnivore | 2.31597 | 0.02389 |
| HRGMv2_3983_16_8 | vegan > omnivore | 2.15694 | 0.00229 |
| HRGMv2_3983_16_9 | vegan > omnivore | 1.49023 | 0.00229 |
| HRGMv2_3983_16_9 | vegetarian > omnivore | 1.75820 | 0.01613 |
| HRGMv2_3983_16_10 | vegetarian > omnivore | 2.38115 | 0.03069 |
| HRGMv2_3983_16_10 | vegan > omnivore | 1.59325 | 0.00229 |
| HRGMv2_3983_16_11 | vegetarian > omnivore | 3.36287 | 0.01175 |
| HRGMv2_3983_16_11 | vegan > omnivore | 2.65336 | 0.00229 |
| HRGMv2_3983_16_12 | vegan > omnivore | 1.58336 | 0.00229 |
| HRGMv2_3983_16_12 | vegetarian > omnivore | 1.43391 | 0.03069 |