Cluster: HRGMv2_3983_CGC73
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_08851
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_11 | 12509 | 13942 | + | GH29 |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_12 | 13962 | 16070 | + | GH2 |
| peptidase | HRGMv2_3983_15 | HRGMv2_3983_15_13 | 16102 | 18981 | + | I39.UPW |
| pfam | HRGMv2_3983_15 | HRGMv2_3983_15_14 | 18995 | 20788 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_15 | HRGMv2_3983_15_15 | 20803 | 23946 | + | 1.B.14.6.2 |
| pfam | HRGMv2_3983_15 | HRGMv2_3983_15_16 | 23959 | 25734 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3983_15 | HRGMv2_3983_15_17 | 25753 | 27180 | + | F5_F8_type_C |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_18 | 27282 | 31157 | + | GH31_18 |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_19 | 31286 | 34228 | + | GH105 | PL33_2 |
| NULL(UNKNOWN) | HRGMv2_3983_15 | HRGMv2_3983_15_20 | 34297 | 34689 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_21 | 35316 | 36386 | + | GH154 |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_22 | 36408 | 37325 | + | GT2 |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_23 | 37521 | 38423 | + | GT10 |
| TF | HRGMv2_3983_15 | HRGMv2_3983_15_24 | 38423 | 38809 | + | LytTR |
| NULL(UNKNOWN) | HRGMv2_3983_15 | HRGMv2_3983_15_25 | 38961 | 39620 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_15 | HRGMv2_3983_15_26 | 39598 | 40857 | + | GT4 |
Gene ID: HRGMv2_3983_15_11
Type: CAZyme
Location: 12509 - 13942 (+)
Type: CAZyme
Location: 12509 - 13942 (+)
Gene ID: HRGMv2_3983_15_12
Type: CAZyme
Location: 13962 - 16070 (+)
Type: CAZyme
Location: 13962 - 16070 (+)
Gene ID: HRGMv2_3983_15_13
Type: peptidase
Location: 16102 - 18981 (+)
Type: peptidase
Location: 16102 - 18981 (+)
Gene ID: HRGMv2_3983_15_14
Type: pfam
Location: 18995 - 20788 (+)
Type: pfam
Location: 18995 - 20788 (+)
Gene ID: HRGMv2_3983_15_15
Type: TC
Location: 20803 - 23946 (+)
Type: TC
Location: 20803 - 23946 (+)
Gene ID: HRGMv2_3983_15_16
Type: pfam
Location: 23959 - 25734 (+)
Type: pfam
Location: 23959 - 25734 (+)
Gene ID: HRGMv2_3983_15_17
Type: pfam
Location: 25753 - 27180 (+)
Type: pfam
Location: 25753 - 27180 (+)
Gene ID: HRGMv2_3983_15_18
Type: CAZyme
Location: 27282 - 31157 (+)
Type: CAZyme
Location: 27282 - 31157 (+)
Gene ID: HRGMv2_3983_15_19
Type: CAZyme
Location: 31286 - 34228 (+)
Type: CAZyme
Location: 31286 - 34228 (+)
Gene ID: HRGMv2_3983_15_20
Type:
Location: 34297 - 34689 (+)
Type:
Location: 34297 - 34689 (+)
Gene ID: HRGMv2_3983_15_21
Type: CAZyme
Location: 35316 - 36386 (+)
Type: CAZyme
Location: 35316 - 36386 (+)
Gene ID: HRGMv2_3983_15_22
Type: CAZyme
Location: 36408 - 37325 (+)
Type: CAZyme
Location: 36408 - 37325 (+)
Gene ID: HRGMv2_3983_15_23
Type: CAZyme
Location: 37521 - 38423 (+)
Type: CAZyme
Location: 37521 - 38423 (+)
Gene ID: HRGMv2_3983_15_24
Type: TF
Location: 38423 - 38809 (+)
Type: TF
Location: 38423 - 38809 (+)
Gene ID: HRGMv2_3983_15_25
Type:
Location: 38961 - 39620 (+)
Type:
Location: 38961 - 39620 (+)
Gene ID: HRGMv2_3983_15_26
Type: CAZyme
Location: 39598 - 40857 (+)
Type: CAZyme
Location: 39598 - 40857 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_15_20 | vegan > omnivore | 2.35240 | 0.00229 |
| HRGMv2_3983_15_20 | vegetarian > omnivore | 1.80529 | 0.03246 |