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Cluster: HRGMv2_3983_CGC71

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_14 HRGMv2_3983_14_93 141332 143734 - GH95
TC HRGMv2_3983_14 HRGMv2_3983_14_94 144037 147036 + 1.B.14.6.1
pfam HRGMv2_3983_14 HRGMv2_3983_14_95 147059 148720 + SusD_RagB | SusD-like_3
TF HRGMv2_3983_14 HRGMv2_3983_14_96 148900 152955 + HTH_AraC
CAZyme HRGMv2_3983_14 HRGMv2_3983_14_97 153100 155115 + GH36
CAZyme HRGMv2_3983_14 HRGMv2_3983_14_98 155141 157075 + CE20 | CE20
CAZyme HRGMv2_3983_14 HRGMv2_3983_14_99 157107 159263 + GH36
CAZyme HRGMv2_3983_14 HRGMv2_3983_14_100 159267 161480 + GH92
TC HRGMv2_3983_14 HRGMv2_3983_14_101 161593 162435 - 1.A.30.1.3
sulfatase HRGMv2_3983_14 HRGMv2_3983_14_102 162465 163049 - S1_7
TC HRGMv2_3983_14 HRGMv2_3983_14_103 163094 164011 - 2.A.115.1.5
Gene ID: HRGMv2_3983_14_93
Type: CAZyme
Location: 141332 - 143734 (-)
Gene ID: HRGMv2_3983_14_94
Type: TC
Location: 144037 - 147036 (+)
Gene ID: HRGMv2_3983_14_95
Type: pfam
Location: 147059 - 148720 (+)
Gene ID: HRGMv2_3983_14_96
Type: TF
Location: 148900 - 152955 (+)
Gene ID: HRGMv2_3983_14_97
Type: CAZyme
Location: 153100 - 155115 (+)
Gene ID: HRGMv2_3983_14_98
Type: CAZyme
Location: 155141 - 157075 (+)
Gene ID: HRGMv2_3983_14_99
Type: CAZyme
Location: 157107 - 159263 (+)
Gene ID: HRGMv2_3983_14_100
Type: CAZyme
Location: 159267 - 161480 (+)
Gene ID: HRGMv2_3983_14_101
Type: TC
Location: 161593 - 162435 (-)
Gene ID: HRGMv2_3983_14_102
Type: sulfatase
Location: 162465 - 163049 (-)
Gene ID: HRGMv2_3983_14_103
Type: TC
Location: 163094 - 164011 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_14_93 vegan > omnivore 2.54128 0.00229

🧭 Explore Read Mapping of CGC

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