Cluster: HRGMv2_3983_CGC57
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_02368
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_11 | HRGMv2_3983_11_60 | 68319 | 71309 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_11 | HRGMv2_3983_11_61 | 71324 | 72967 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3983_11 | HRGMv2_3983_11_62 | 72986 | 74890 | + | GxGYxYP_C | GxGYxYP_N_3rd |
| CAZyme | HRGMv2_3983_11 | HRGMv2_3983_11_63 | 74991 | 77267 | + | GH92 |
| TF | HRGMv2_3983_11 | HRGMv2_3983_11_64 | 77420 | 78001 | + | GerE |
| STP | HRGMv2_3983_11 | HRGMv2_3983_11_65 | 78610 | 79587 | + | FecR |
| TC | HRGMv2_3983_11 | HRGMv2_3983_11_66 | 79784 | 83146 | + | 1.B.14.6.1 |
| TC | HRGMv2_3983_11 | HRGMv2_3983_11_67 | 83176 | 84918 | + | 8.A.46.1.4 |
| CAZyme | HRGMv2_3983_11 | HRGMv2_3983_11_68 | 84949 | 85920 | + | CBM32 |
| pfam | HRGMv2_3983_11 | HRGMv2_3983_11_69 | 85938 | 87605 | + | GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_2nd | GxGYxYP_N_3rd |
| CAZyme | HRGMv2_3983_11 | HRGMv2_3983_11_70 | 87629 | 89083 | + | GH29 |
| CAZyme | HRGMv2_3983_11 | HRGMv2_3983_11_71 | 89094 | 92675 | + | GH2 |
Gene ID: HRGMv2_3983_11_60
Type: TC
Location: 68319 - 71309 (+)
Type: TC
Location: 68319 - 71309 (+)
Gene ID: HRGMv2_3983_11_61
Type: pfam
Location: 71324 - 72967 (+)
Type: pfam
Location: 71324 - 72967 (+)
Gene ID: HRGMv2_3983_11_62
Type: pfam
Location: 72986 - 74890 (+)
Type: pfam
Location: 72986 - 74890 (+)
Gene ID: HRGMv2_3983_11_63
Type: CAZyme
Location: 74991 - 77267 (+)
Type: CAZyme
Location: 74991 - 77267 (+)
Gene ID: HRGMv2_3983_11_64
Type: TF
Location: 77420 - 78001 (+)
Type: TF
Location: 77420 - 78001 (+)
Gene ID: HRGMv2_3983_11_65
Type: STP
Location: 78610 - 79587 (+)
Type: STP
Location: 78610 - 79587 (+)
Gene ID: HRGMv2_3983_11_66
Type: TC
Location: 79784 - 83146 (+)
Type: TC
Location: 79784 - 83146 (+)
Gene ID: HRGMv2_3983_11_67
Type: TC
Location: 83176 - 84918 (+)
Type: TC
Location: 83176 - 84918 (+)
Gene ID: HRGMv2_3983_11_68
Type: CAZyme
Location: 84949 - 85920 (+)
Type: CAZyme
Location: 84949 - 85920 (+)
Gene ID: HRGMv2_3983_11_69
Type: pfam
Location: 85938 - 87605 (+)
Type: pfam
Location: 85938 - 87605 (+)
Gene ID: HRGMv2_3983_11_70
Type: CAZyme
Location: 87629 - 89083 (+)
Type: CAZyme
Location: 87629 - 89083 (+)
Gene ID: HRGMv2_3983_11_71
Type: CAZyme
Location: 89094 - 92675 (+)
Type: CAZyme
Location: 89094 - 92675 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.