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Cluster: HRGMv2_3983_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_10 HRGMv2_3983_10_50 89246 91183 - CBM6
NULL(UNKNOWN) HRGMv2_3983_10 HRGMv2_3983_10_51 91308 93674 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_10 HRGMv2_3983_10_52 93699 95732 - 1.B.14.6.8
pfam HRGMv2_3983_10 HRGMv2_3983_10_53 95759 96316 - DUF3575
CAZyme HRGMv2_3983_10 HRGMv2_3983_10_54 96547 99306 - PL40
TC HRGMv2_3983_10 HRGMv2_3983_10_55 99469 101376 + 3.D.1.5.1
STP HRGMv2_3983_10 HRGMv2_3983_10_56 101392 103158 + Fer4
TC HRGMv2_3983_10 HRGMv2_3983_10_57 103178 103654 + 3.D.1.5.1
Gene ID: HRGMv2_3983_10_50
Type: CAZyme
Location: 89246 - 91183 (-)
Gene ID: HRGMv2_3983_10_51
Type:
Location: 91308 - 93674 (-)
Gene ID: HRGMv2_3983_10_52
Type: TC
Location: 93699 - 95732 (-)
Gene ID: HRGMv2_3983_10_53
Type: pfam
Location: 95759 - 96316 (-)
Gene ID: HRGMv2_3983_10_54
Type: CAZyme
Location: 96547 - 99306 (-)
Gene ID: HRGMv2_3983_10_55
Type: TC
Location: 99469 - 101376 (+)
Gene ID: HRGMv2_3983_10_56
Type: STP
Location: 101392 - 103158 (+)
Gene ID: HRGMv2_3983_10_57
Type: TC
Location: 103178 - 103654 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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